View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13449_low_3 (Length: 289)
Name: NF13449_low_3
Description: NF13449
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13449_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 3642676 - 3642405
Alignment:
| Q |
1 |
acctgataacaaagaggtatggtttagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaa |
100 |
Q |
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| T |
3642676 |
acctgataacaaagaggtatggtatagtgccagaaagagagcgttatgattcacggttgatcttttgattcgggcaggtaatttccaagagacggaaaaa |
3642577 |
T |
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| Q |
101 |
ctaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtga |
200 |
Q |
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| T |
3642576 |
ctaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaagtga |
3642477 |
T |
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| Q |
201 |
aagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaaggattgcaaagacaattggtcatggt |
272 |
Q |
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| T |
3642476 |
aagtacgactaaccaagctgaaaccttttcaaaatgaagcataaaaggattgcaaagacaattggtcatggt |
3642405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 233
Target Start/End: Complemental strand, 9807164 - 9806986
Alignment:
| Q |
55 |
ggttgatcttttgattcgggcaggtaatttccaagagacggaaaaactaatgaagacaatgtcaataaaaccaaatattgccatattcggtgctctttta |
154 |
Q |
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| T |
9807164 |
ggttgatcttttgagtcgggcaggtcattttagagaggcggaaaaactaatggagacaatgtcaatacgaccaaatattgccatatggggtgctctttta |
9807065 |
T |
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| Q |
155 |
aatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaa |
233 |
Q |
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| T |
9807064 |
aatggttgccagattcatgaaaacatccctgttgctagtcaagtgaaagtacgattagcagagctggaacctattcaaa |
9806986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 9806908 - 9806873
Alignment:
| Q |
234 |
atgaagcataaaaggattgcaaagacaattggtcat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9806908 |
atgaagcataaaaggattgcaaagacaattggtcat |
9806873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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