View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_high_10 (Length: 245)
Name: NF1344_high_10
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 24 - 245
Target Start/End: Complemental strand, 31830110 - 31829889
Alignment:
| Q |
24 |
tttccgaggtatcccatcaaccctctgccaacgcaagacactttcatattgcgaacatcatctctaatattgcttttcacccaaactgttagaaatatcc |
123 |
Q |
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| T |
31830110 |
tttccgaggtatcccatcaaacctctgccaacgcaagacactttcatattgcgaacatcatctctaatattgcttttcacccaaactgttagaaatatcc |
31830011 |
T |
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| Q |
124 |
caaccatttgcttactagcaaccaaacaatatctcgagttctctgtctgtctatctctgtcctccatagagacagaccctctatacaacatcggtgaata |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31830010 |
caaccatttgcttactagcaaccaaacaatatctcgagttctctgtctgtctatctctgtcctccatagagacagaccctctatacaacatcggtgaata |
31829911 |
T |
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| Q |
224 |
ttgcgctacaactggagagtcc |
245 |
Q |
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|||||||||||||||||||||| |
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| T |
31829910 |
ttgcgctacaactggagagtcc |
31829889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 38122454 - 38122593
Alignment:
| Q |
24 |
tttccgaggtatcccatcaaccctctgccaacgcaagacactttcatattgcgaacatcatctctaatattgcttttcacccaaactgttagaaatatcc |
123 |
Q |
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||||| || ||||||||||| ||||| ||||| |||||||||||||| || |||| |||||||| |||| ||||||||||||||||||||||||| || |
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| T |
38122454 |
tttccaagatatcccatcaatcctcttccaacacaagacactttcatgttatgaacgtcatctctgatatcacttttcacccaaactgttagaaataccc |
38122553 |
T |
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| Q |
124 |
caaccatttgcttactagcaaccaaacaatatctcgagtt |
163 |
Q |
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| T |
38122554 |
ctaccatttgcttactagcaaccaaacagtatctcgagtt |
38122593 |
T |
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