View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_high_4 (Length: 514)
Name: NF1344_high_4
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 181 - 439
Target Start/End: Original strand, 38150938 - 38151190
Alignment:
| Q |
181 |
aatatacctgattaacctatataaaaataaaataaaactttctctcacctctctactgtcatacagtactggattcatgcaaatagcaacttctctacgc |
280 |
Q |
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| T |
38150938 |
aatatagctgattaaccaaaataaaaataaaataaaactttctctcacctctctactgtcatacagtactggattcatgcaaatagcaacttctctacgc |
38151037 |
T |
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| Q |
281 |
ctttaaccactcttcacttcacagtcacttcatttgttcccttcgnnnnnnnnnnnnnnnnnaaacctttcctataccagatgtccagatctctctgata |
380 |
Q |
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| T |
38151038 |
ctttaaccactcttcacttcacagtcacttcatttgttcccttcg------tctctctctctaaacctttcctataccagatgtccagatctctctgata |
38151131 |
T |
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| Q |
381 |
aaactttgatggaaccgtgttgttttggatttcctcatctcttccctagtggctagaga |
439 |
Q |
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| T |
38151132 |
aaactttgatggaaccgtgttgttttggatttcctcatctcttccctagtggctagaga |
38151190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 38150831 - 38150892
Alignment:
| Q |
121 |
gtgcacaattttaatactatttcagtgagaactctatcaaatctaattattcttataaacaa |
182 |
Q |
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| T |
38150831 |
gtgcaaaattttaatactattacagtgagaactctatcaaatctaattattcttataaacaa |
38150892 |
T |
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