View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_high_6 (Length: 392)
Name: NF1344_high_6
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_high_6 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 38184252 - 38184604
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184252 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
38184351 |
T |
|
| Q |
111 |
caccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataacttttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38184352 |
caccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataacttttt |
38184451 |
T |
|
| Q |
211 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184452 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatga |
38184551 |
T |
|
| Q |
311 |
aacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184552 |
aacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
38184604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 11 - 363
Target Start/End: Original strand, 38179583 - 38179935
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
38179583 |
cataggaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctccacctgacta |
38179682 |
T |
|
| Q |
111 |
caccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataacttttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38179683 |
caccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataacttttt |
38179782 |
T |
|
| Q |
211 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38179783 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatga |
38179882 |
T |
|
| Q |
311 |
aacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179883 |
aacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
38179935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 38169769 - 38170118
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169769 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
38169868 |
T |
|
| Q |
111 |
caccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataacttttt |
210 |
Q |
| |
|
|||||||| |||||||||||||| | ||| |||||||||||||||||||||| | |||||| |||| | || |||||||||||||| | ||||| |
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| T |
38169869 |
caccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttt |
38169968 |
T |
|
| Q |
211 |
catctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatga |
310 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| |||||||||||||||||| |
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|
| T |
38169969 |
tatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatga |
38170068 |
T |
|
| Q |
311 |
aacataaaccacagacgattcatcctttgaatccaaccattcaaagtaat |
360 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| || ||||| |
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| T |
38170069 |
aacataaacaacagacttttcatcctttgaatccaaccattgaatgtaat |
38170118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 35060909 - 35060794
Alignment:
| Q |
15 |
ggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc |
114 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| |||||||| |||| |||||||||||| ||| || || | ||||||||| ||| ||||| |
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|
| T |
35060909 |
ggaaccccagataccaaactttccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaatgaagaatgggaaagaacctccacttgagaacacc |
35060810 |
T |
|
| Q |
115 |
atttcactatcttccc |
130 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
35060809 |
acttcactatcttccc |
35060794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 330
Target Start/End: Complemental strand, 35053988 - 35053880
Alignment:
| Q |
222 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaacca |
321 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| | | ||||||||||||||||||||| |
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|
| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacataaacca |
35053889 |
T |
|
| Q |
322 |
cagacgatt |
330 |
Q |
| |
|
|||| |||| |
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|
| T |
35053888 |
cagaagatt |
35053880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 35054175 - 35054056
Alignment:
| Q |
11 |
cataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgacta |
110 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||| ||||| || |||| |||||||||||| ||| | || || | || ||||| ||| | |
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|
| T |
35054175 |
cataggaaccccttttaccaagctttccaaagttgaattccaaccacagtgtgtcaaaaaacaacccaatgaaggatgtgaaagaatctccatttgagaa |
35054076 |
T |
|
| Q |
111 |
caccatttcactatcttccc |
130 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35054075 |
caccatttcactatcttccc |
35054056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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