View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_high_9 (Length: 266)
Name: NF1344_high_9
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 26245803 - 26245870
Alignment:
| Q |
174 |
gttaaaatctttataattgaattgcagaaacccttgcacgatagcttcttccttccaaagcccctatg |
241 |
Q |
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| T |
26245803 |
gttaaaatctttataattgaattgcagaaacccttgcacgatagcttcttccttccatagcccctatg |
26245870 |
T |
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Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 26245680 - 26245745
Alignment:
| Q |
44 |
ctatcagttcctgcaactcccaccttcaccatcgcttctcacagaagaatcccttctaaactcgcg |
109 |
Q |
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| T |
26245680 |
ctatcagttcctgcaactcccaccttcaccatcgcttctcacagaagaatcccttctcaactcgcg |
26245745 |
T |
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