View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_1 (Length: 715)
Name: NF1344_low_1
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_1 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 659; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 16 - 686
Target Start/End: Complemental strand, 16804060 - 16803390
Alignment:
| Q |
16 |
atgaagcattccaccaattgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
115 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16804060 |
atgaagcattccaccaatcgtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatg |
16803961 |
T |
|
| Q |
116 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803960 |
gttatataataagttttttaattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaa |
16803861 |
T |
|
| Q |
216 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803860 |
accatgtttcaacacaacatcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaat |
16803761 |
T |
|
| Q |
316 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803760 |
acgcattgctcttccgatgataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactt |
16803661 |
T |
|
| Q |
416 |
tgaactctaataatgaccctcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatat |
515 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803660 |
tgaactctaataatgacactcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatat |
16803561 |
T |
|
| Q |
516 |
tggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggt |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16803560 |
tggtcttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggt |
16803461 |
T |
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| Q |
616 |
atctcaggcaaactacacttttgagataaatcagtggtttctggtgttgggactgtctcaactcccataac |
686 |
Q |
| |
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| T |
16803460 |
atctcaggcaaactacactttggagataaatcagtggtttctggtgttgggactgtctcaactcccataac |
16803390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 35 - 685
Target Start/End: Original strand, 19573208 - 19573852
Alignment:
| Q |
35 |
gtgttcattatcttaaccatgtgttttcttttcccccaaataaggtgccaaatattgttgtatcaccgtttatgggtgatggttatataataagtttttt |
134 |
Q |
| |
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|||||| |||||| |||||||||||||||||| |||||||||| | | | || | | ||||| | |||||||||| ||| ||| |||| |||| || |
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| T |
19573208 |
gtgttcgttatctcaaccatgtgttttctttttccccaaataaaattcaagatgtgcctttatcatcatttatgggtgctggatatgtaatgagttattc |
19573307 |
T |
|
| Q |
135 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
234 |
Q |
| |
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|||||||||||| ||||||||||||||| || |||| ||||| | |||||||| ||||||||||||||||| ||||| ||||||||||| ||| |||| |
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| T |
19573308 |
aattggtacccctccatttcaactttacagtcttattgatacaggaaatgataacatttggtttcaatgtaagccgtgcaaaccatgtttaaaccaaaca |
19573407 |
T |
|
| Q |
235 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatg |
334 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||| ||||||||||| ||| ||||||||| ||||||||||| ||| | ||||||||||||| | | |
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| T |
19573408 |
tcaccaatgtttcacccttcaaaatcatcaacctacaaaaccattccatgcacttctcccatatgcaaaaatgcaga---tgggcattgctcttccaaag |
19573504 |
T |
|
| Q |
335 |
ataaaaaggtatgtgaatatagttttacatatggtggtgaggcatattcccaaggagatcttagtatagacactcttactttgaactctaataatgaccc |
434 |
Q |
| |
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|| ||||| |||||||||||| | ||||||||||| || | ||||| |||||||||||| || | ||||||||||||||||||||||| |||| | | |
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|
| T |
19573505 |
attaaaagatatgtgaatataaatatacatatggtgatggg---tattcgcaaggagatcttggtgtcgacactcttactttgaactctaacaatggcac |
19573601 |
T |
|
| Q |
435 |
tcctatctcatttaaaaatattgtaataggatgcggccatagaaataagggtccacttgagggatatgtatccggaaatattggtcttggacgtggacct |
534 |
Q |
| |
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|||||||||||| ||||||||||| || ||||| || ||||||||| |||| ||| | ||||| ||||| || ||||||||||| |||| ||| || ||| |
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| T |
19573602 |
tcctatctcattcaaaaatattgtgattggatgtgggcatagaaatcaggggccattagaggggtatgtctcaggaaatattggccttgcacgcgggcct |
19573701 |
T |
|
| Q |
535 |
ttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatgaaggtatctcaggcaaactacact |
634 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||| |||||||| || ||| | ||| ||||| |||| | |
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| T |
19573702 |
ttgtcttttatatcccaattgaattcttcaattggtggaaaattttcttattgtctagttccattattttcgaaggaaaacgtttcaagcaaattacatt |
19573801 |
T |
|
| Q |
635 |
tttgagataaatcagtggtttctggtgttgggactgtctcaactcccataa |
685 |
Q |
| |
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|| ||||||||||| ||||||||| |||| ||||| ||||||||||||| |
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| T |
19573802 |
ttggagataaatcaacggtttctggacttggaactgtttcaactcccataa |
19573852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 139 - 340
Target Start/End: Complemental strand, 15622 - 15421
Alignment:
| Q |
139 |
ggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaacatcac |
238 |
Q |
| |
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||||| |||||||| || ||||| |||| ||||||||| | | |||| ||||||||||||||||| ||||||||||||||||| ||| |||||| | |
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| T |
15622 |
ggtactccaccattccagctttatggtgctatggatacaggtagtgatggaatttggtttcaatgtaagccgtgtaaaccatgtttaaaccaaacatctc |
15523 |
T |
|
| Q |
239 |
caatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcccaaatgcaaaaatgtagaaaatacgcattgctcttccgatgataa |
338 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||| ||| ||| | | ||||||| |||||||||||| || |||| |
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| T |
15522 |
caatgtttaacccttcaaaatcttcaacctataaaaacattcattgctcttctcccacatgtaaacgtttcgaaaatagccattgctcttccaatcataa |
15423 |
T |
|
| Q |
339 |
aa |
340 |
Q |
| |
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|| |
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|
| T |
15422 |
aa |
15421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 521 - 610
Target Start/End: Complemental strand, 15237 - 15148
Alignment:
| Q |
521 |
ttggacgtggacctttgtcttttatatcccaattgaattcttcgattggtggaaaattttcatattgtttggttccgttattttcaaatg |
610 |
Q |
| |
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||||||| |||||||| || || ||||| ||||||| |||||||||| |||||||||||| |||||| | || || ||||||||||||| |
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| T |
15237 |
ttggacgcggacctttatcgttaatatctcaattgagttcttcgattaatggaaaattttcttattgtctcgtgccattattttcaaatg |
15148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 135 - 293
Target Start/End: Original strand, 8894073 - 8894231
Alignment:
| Q |
135 |
aattggtaccccaccatttcaactttacggtgttatggatacggccaatgataatatttggtttcaatgtaatccgtgtaaaccatgtttcaacacaaca |
234 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| ||||||| | || ||| || |||||||||||||| || |||||||||||||| ||| |||| |
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| T |
8894073 |
aattggtacccctccatttcagctttatggtgttgtggatacaggcagtgacggaatatggtttcaatgtaagccttgtaaaccatgtttaaaccaaaca |
8894172 |
T |
|
| Q |
235 |
tcaccaatgtttgacccttcaaaatcttcaacctataaaaccattccttgctcttctcc |
293 |
Q |
| |
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|| || || ||| ||||||||||||| |||||||| |||| ||| | |||||||||||| |
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|
| T |
8894173 |
tctccgatatttaacccttcaaaatcatcaacctacaaaaacatccgttgctcttctcc |
8894231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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