View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_10 (Length: 314)
Name: NF1344_low_10
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 38897501 - 38897755
Alignment:
| Q |
16 |
attagataattattgtaacaaaagagaaaatgtatagataatgttgtcattcgtgatatgttcgcatgcagttgatttgcgacattgagcatgactct-- |
113 |
Q |
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| T |
38897501 |
attagataattattgtaacaaaagataaaatgtatagataatgttgtcattcgtgatacgttagcatgcaattgatttgcgatatcgagcatgactctct |
38897600 |
T |
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| Q |
114 |
ttctcttaacaactagtacaaagtaaatgcgaannnnnnnnnnnnn-cttattaaagttgttaacatgaataactattgaaacggaaagttttcattaaa |
212 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38897601 |
ttctcttaacaactcgtacaaagtaaatgcgatttttttttatatttcttattaaagctgttaacatgaataattattgaaacggaaagttttcattaaa |
38897700 |
T |
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| Q |
213 |
tgaaatattacgatgaataaacttaatttatggcggaacatgtttaattataaaa |
267 |
Q |
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| T |
38897701 |
tgaaatattacgatgaataaacttaatttatggcggaacatgttcaattataaaa |
38897755 |
T |
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