View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_12 (Length: 273)
Name: NF1344_low_12
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 47268015 - 47268237
Alignment:
| Q |
1 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47268015 |
cctatatcatcccacataagaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
47268114 |
T |
|
| Q |
101 |
tgagatgcttggtaaacaaaattaacctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtgatgttccaagtactcattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47268115 |
tgagatgcttggtaaacaaaattaacctaaagcaagtggttcctagttttgtcatgtttatctttttgtttgtcgtttgtgatgttccaagtactcattc |
47268214 |
T |
|
| Q |
201 |
ttgtctcaaattgaagtaaaagt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47268215 |
ttgtctcaaattgaagtaaaagt |
47268237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 47279391 - 47279540
Alignment:
| Q |
5 |
tatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgag |
104 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||| ||||||||||| || |
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| T |
47279391 |
tatcatcccacataagaatgcagaaggagaagaaggtttgatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagataag |
47279490 |
T |
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| Q |
105 |
atgcttggtaaacaaaattaacctaaagcaagtggttcctagttttgtcat |
155 |
Q |
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| T |
47279491 |
atgtttggtaaccaaaatcaacctacaacaattgg-gcctagttttgtcat |
47279540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 155
Target Start/End: Original strand, 47283982 - 47284133
Alignment:
| Q |
3 |
tatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatg |
102 |
Q |
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| T |
47283982 |
tatataatcccacataagaatgcagaaggagaagaaggtttaatattactaattttcttaacctctgaagttatgaagaggtttgctgaagagttagata |
47284081 |
T |
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| Q |
103 |
agatgcttggtaaacaaaattaacctaaagcaagtggttcctagttttgtcat |
155 |
Q |
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||||| ||||||| |||||| |||||| | | | ||| ||||||||||||||| |
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| T |
47284082 |
agatgtttggtaatcaaaatcaacctacaacgattgg-tcctagttttgtcat |
47284133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 47243111 - 47243239
Alignment:
| Q |
1 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
100 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||||||||| || ||||||| | |||| ||| || ||||| ||||||||||||||||||||||||||| |
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| T |
47243111 |
cctatattgtcccgcataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttaga |
47243210 |
T |
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| Q |
101 |
tgagatgcttggtaaacaaaattaaccta |
129 |
Q |
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||| ||||||||||| |||||||| |||| |
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| T |
47243211 |
tgatatgcttggtaaccaaaattatccta |
47243239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 47298840 - 47298719
Alignment:
| Q |
1 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
100 |
Q |
| |
|
|||||||| ||||| ||| |||| || ||||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| || |
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| T |
47298840 |
cctatatcgtcccatataagaatataaaaggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttgga |
47298741 |
T |
|
| Q |
101 |
tgagatgcttggtaaacaaaat |
122 |
Q |
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||||||||||||||| |||||| |
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| T |
47298740 |
tgagatgcttggtaaccaaaat |
47298719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 47292233 - 47292105
Alignment:
| Q |
1 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
100 |
Q |
| |
|
|||||||| ||||| ||| |||| || | ||||||||| ||| || |||| | |||||||| ||| ||||| ||||||||||||||| |||||||| || |
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| T |
47292233 |
cctatatcgtcccatataagaatataaatggagaagaaactttgatgttaccaatttgtttgccctctgaagatatgaagaggtttgcaaaagagttgga |
47292134 |
T |
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| Q |
101 |
tgagatgcttggtaaacaaaattaaccta |
129 |
Q |
| |
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||||||||||||||| |||||||| |||| |
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| T |
47292133 |
tgagatgcttggtaaccaaaattatccta |
47292105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 47257252 - 47257366
Alignment:
| Q |
15 |
catatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggta |
114 |
Q |
| |
|
|||| ||||| | ||||||||||||| || ||||||| | |||| ||| | ||||| |||||||||||||| ||| ||||||||||| |||||||||| |
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| T |
47257252 |
cataagaatgcaaaaggagaagaagggttaatattaccaatttgcttgcctcctgaagatatgaagaggtttgttaaggagttagatgatatgcttggta |
47257351 |
T |
|
| Q |
115 |
aacaaaattaaccta |
129 |
Q |
| |
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| |||||||| |||| |
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|
| T |
47257352 |
accaaaattatccta |
47257366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 32731778 - 32731900
Alignment:
| Q |
1 |
cctatatcatcccacatatgaatgtagaaggagaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttaga |
100 |
Q |
| |
|
||||||| |||| |||| ||||| | ||||||||||||| || ||||| | | |||| ||| || ||||| ||||||||||||||||||||||||||| |
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| T |
32731778 |
cctatattgtcccgcataagaatgcaaaaggagaagaagggttaatatttccaatttgcttgccccctgaagatatgaagaggtttgctaaagagttaga |
32731877 |
T |
|
| Q |
101 |
tgagatgcttggtaaacaaaatt |
123 |
Q |
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||| ||||||||||| ||||||| |
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| T |
32731878 |
tgatatgcttggtaaccaaaatt |
32731900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 20519818 - 20519901
Alignment:
| Q |
32 |
agaagaaggtttcatattactagtttgtttgtcctttgaagctatgaagaggtttgctaaagagttagatgagatgcttggtaa |
115 |
Q |
| |
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|||| ||||||| ||||||| | ||| |||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519818 |
agaaaaaggtttaatattaccaatttctttgccttatgaagatatgaagaggtttgctaaagagttagatgagatgcttggtaa |
20519901 |
T |
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