View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_15 (Length: 250)
Name: NF1344_low_15
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_15 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 47267788 - 47268027
Alignment:
| Q |
11 |
ttattctgtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttattt |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47267788 |
ttatgctgtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaagagcggtgtttattt |
47267887 |
T |
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| Q |
111 |
acaactataaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaa |
210 |
Q |
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| T |
47267888 |
acaactataaggtcttgtgttgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaa |
47267987 |
T |
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| Q |
211 |
gtggggctgggccttttcctggagcagcctatatcatccc |
250 |
Q |
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| T |
47267988 |
gtggggctgggccttttcctggagcagcctatatcatccc |
47268027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 47299060 - 47298828
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||| |
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| T |
47299060 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactg |
47298961 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
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| T |
47298960 |
taaggtcttgtattatttcagatttgactcgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgtatggtggagttgcaaaaggtggggc |
47298861 |
T |
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| Q |
218 |
tgggccttttcctggagcagcctatatcatccc |
250 |
Q |
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| T |
47298860 |
tggaccttttcctggagcaacctatatcgtccc |
47298828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 47292453 - 47292221
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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| T |
47292453 |
gtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactg |
47292354 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
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| T |
47292353 |
taaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtatggtggagttgcaaaaggtggggc |
47292254 |
T |
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| Q |
218 |
tgggccttttcctggagcagcctatatcatccc |
250 |
Q |
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||| | ||||||||| || |||||||| |||| |
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| T |
47292253 |
tggaacatttcctggatcaacctatatcgtccc |
47292221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 47283760 - 47283992
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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||||| ||| |||||||| ||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||| |
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| T |
47283760 |
gtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacag |
47283859 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggc |
217 |
Q |
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| T |
47283860 |
taagatcgtgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaatttcggatggggtgaggcggtgtatggtggagtggtaaaaggtggggc |
47283959 |
T |
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| Q |
218 |
tgggccttttcctggagcagcctatatcatccc |
250 |
Q |
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||| ||||| ||||||||| | ||||| ||||| |
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| T |
47283960 |
tggacctttacctggagcaacgtatataatccc |
47283992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 47279167 - 47279348
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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||||| ||| |||||||| ||||||| |||||||||| ||||| ||||||||| | ||||||||||||||||||||||| || |||||||||||||| | |
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| T |
47279167 |
gtggaattgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacaa |
47279266 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtgg |
199 |
Q |
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| T |
47279267 |
taagatcttgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaattttggatggggtgaggcggtgtatggtgg |
47279348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 47242891 - 47242989
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaact |
116 |
Q |
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||||||||| |||||||| |||| || |||||||||||||||| ||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
47242891 |
gtggagttgataagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaact |
47242989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 47257018 - 47257214
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaacta |
117 |
Q |
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||||||||| |||||||| ||||||| ||||||||||| | || ||||| || | |||||| |||||||||||||||| || ||||||||||||| |
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| T |
47257018 |
gtggagttgataagaaaagcaaaagctcaagttacagagaagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagg |
47257117 |
T |
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| Q |
118 |
taaggtcgtgtattgtttcagatgtaactcgtataaagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtgg |
214 |
Q |
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| T |
47257118 |
gaagaacatgtatggtgtcagattggactcgtgctaagttctcagaagtgaatttcggatggggtgaagctgtgtatggtggagcagcaaaaggtgg |
47257214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 32731558 - 32731655
Alignment:
| Q |
18 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaggagcggtgtttatttacaac |
115 |
Q |
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||||||||| |||||||| |||| || |||||||||||||||| ||||||||| |||||||| ||||||||||||||| || |||||||||||||| |
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| T |
32731558 |
gtggagttgataagaaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaac |
32731655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 20519702 - 20519785
Alignment:
| Q |
153 |
aagttaagagaagtggattttggatggggtgaggccgtgtatggtggagctgcaaaaagtggggctgggccttttcctggagca |
236 |
Q |
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| T |
20519702 |
aagttcagagaagtgaattttggatggggtgaggcgaagtatggtggagttgcaaaagctggggctgggggttttcgtggagca |
20519785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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