View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1344_low_18 (Length: 242)

Name: NF1344_low_18
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1344_low_18
NF1344_low_18
[»] chr4 (8 HSPs)
chr4 (1-215)||(55907601-55907815)
chr4 (81-183)||(661854-661956)
chr4 (6-131)||(3437630-3437755)
chr4 (13-113)||(547943-548043)
chr4 (17-130)||(1755485-1755598)
chr4 (85-132)||(571330-571377)
chr4 (93-132)||(553767-553806)
chr4 (78-174)||(8186326-8186422)
[»] chr2 (3 HSPs)
chr2 (1-213)||(1036539-1036751)
chr2 (134-213)||(1036345-1036424)
chr2 (80-130)||(45244859-45244909)
[»] chr8 (7 HSPs)
chr8 (82-182)||(14004140-14004240)
chr8 (80-196)||(17642880-17642996)
chr8 (85-174)||(17635623-17635712)
chr8 (82-182)||(5766564-5766664)
chr8 (86-130)||(32151969-32152013)
chr8 (85-132)||(21236154-21236201)
chr8 (101-139)||(18314640-18314678)
[»] chr7 (2 HSPs)
chr7 (80-135)||(10615708-10615763)
chr7 (78-192)||(7977866-7977980)
[»] chr1 (3 HSPs)
chr1 (83-165)||(7555196-7555278)
chr1 (87-147)||(33161200-33161260)
chr1 (80-132)||(9581685-9581737)
[»] chr6 (8 HSPs)
chr6 (80-135)||(6417087-6417142)
chr6 (80-132)||(7132300-7132352)
chr6 (87-130)||(6395539-6395582)
chr6 (81-132)||(7135224-7135275)
chr6 (81-132)||(7138147-7138198)
chr6 (87-132)||(6423907-6423952)
chr6 (87-127)||(6427183-6427223)
chr6 (104-132)||(9412143-9412171)
[»] chr3 (1 HSPs)
chr3 (76-135)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (93-174)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (93-174)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (93-174)||(30616-30697)
[»] chr5 (1 HSPs)
chr5 (85-126)||(20477455-20477496)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 55907815 - 55907601
Alignment:
Q  1 actactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaa 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55907815 actactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagcaatgttggaacaaatgagagaa 55907716  T
Q  101 gtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggta 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907715 ttcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggta 55907616  T
Q  201 tttggcagagaagtg 215  Q
    |||||||||||||||    
T  55907615 tttggcagagaagtg 55907601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 661854 - 661956
Alignment:
Q  81 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagt 180  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  181 gat 183  Q
    |||    
T  661954 gat 661956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 3437755 - 3437630
Alignment:
Q  6 tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa 105  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||||||  || |    || ||| ||| || ||| |||||||||| ||||||| |||||    
T  3437755 tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa 3437656  T
Q  106 agttgtaatattttgggagaaagctc 131  Q
    ||||||||| ||||||||||||||||    
T  3437655 agttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 547943 - 548043
Alignment:
Q  13 gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta 112  Q
    |||||||||||||||||||||||||||| |||| |||  ||| ||||| ||||||   |||||| |||||||||||||| |||||||  |||||||||||    
T  547943 gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta 548042  T
Q  113 a 113  Q
    |    
T  548043 a 548043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Original strand, 1755485 - 1755598
Alignment:
Q  17 agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat 116  Q
    ||||||||||| |||||||| || |||| ||| || |  | ||||||| |||| |||  ||| |||||||||||  ||||||| |||||||||||||| |    
T  1755485 agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 1755584  T
Q  117 tttgggagaaagct 130  Q
    |||| |||||||||    
T  1755585 tttgagagaaagct 1755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 571330 - 571377
Alignment:
Q  85 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 571377  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 132
Target Start/End: Original strand, 553767 - 553806
Alignment:
Q  93 tgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcg 553806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 8186422 - 8186326
Alignment:
Q  78 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 174  Q
    |||||||||||||  |||| || |||||||||||||||||| |||||| | |||| || ||| | || || ||| | |||| ||| |||||||||||    
T  8186422 caatgttggaacatgtgagtgaggtcaaagttgtaatatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgag 8186326  T

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Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1036751 - 1036539
Alignment:
Q  1 actactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaa 100  Q
    ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  || ||||||||||||||||||||||||||||    
T  1036751 actactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagcaatgttggaacaaatgagagaa 1036652  T
Q  101 gtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036651 gtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggta 1036552  T
Q  201 tttggcagagaag 213  Q
    ||||| |||||||    
T  1036551 tttggtagagaag 1036539  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 1036424 - 1036345
Alignment:
Q  134 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036424 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaag 1036345  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Complemental strand, 45244909 - 45244859
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 130  Q
    |||||| ||||||||||||| |||||| || ||||| ||||||||||||||    
T  45244909 atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagct 45244859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 14004140 - 14004240
Alignment:
Q  82 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 181  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| ||||||||||| ||||||||||| |||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  182 a 182  Q
    |    
T  14004240 a 14004240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 17642996 - 17642880
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaag 179  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||| ||| | | ||| ||| |  | ||||||||||||||||| || |    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  180 tgatatttaatggaaaa 196  Q
    |||  || |||||||||    
T  17642896 tgagtttcaatggaaaa 17642880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Complemental strand, 17635712 - 17635623
Alignment:
Q  85 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 174  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||||||||| ||| |||  || ||| |  |||||||||| ||||||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgag 17635623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 5766664 - 5766564
Alignment:
Q  82 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 181  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  182 a 182  Q
    |    
T  5766564 a 5766564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  86 gaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 130  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 21236154 - 21236201
Alignment:
Q  85 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  21236154 ggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcg 21236201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 18314678 - 18314640
Alignment:
Q  101 gtcaaagttgtaatattttgggagaaagctcgtaagcca 139  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  18314678 gtcaaagttgtaatattttgagagaaaactcgtaagcca 18314640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 10615708 - 10615763
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 135  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 10615763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 192
Target Start/End: Original strand, 7977866 - 7977980
Alignment:
Q  78 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcga 177  Q
    ||||||| |||||  |||| || |||||||||| |||||||||||||||| || | || |||  ||| || ||| |||| ||||||||||||||||| ||    
T  7977866 caatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtga 7977965  T
Q  178 agtgatatttaatgg 192  Q
     ||||| || |||||    
T  7977966 cgtgattttcaatgg 7977980  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 7555196 - 7555278
Alignment:
Q  83 ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttgga 165  Q
    ||||||||| |||| || || ||||||||||||||||||||||||||||| || ||| | || |||||| | |||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 33161200 - 33161260
Alignment:
Q  87 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggg 147  Q
    ||||| ||||||||||||||||| ||||  |||||||||||| ||| |||||| |||||||    
T  33161200 aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcggg 33161260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 9581685 - 9581737
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||| |||||||||||||| ||||| |||||||| |||  ||||||||||||    
T  9581685 atgttcgaacaaatgagagatgtcaacgttgtaatctttacggagaaagctcg 9581737  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 6417087 - 6417142
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 135  Q
    |||| ||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaa 6417142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7132300 - 7132352
Alignment:
Q  80 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7132352  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 130
Target Start/End: Original strand, 6395539 - 6395582
Alignment:
Q  87 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 130  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagct 6395582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 7135224 - 7135275
Alignment:
Q  81 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7135275  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 7138147 - 7138198
Alignment:
Q  81 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7138198  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 6423907 - 6423952
Alignment:
Q  87 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 132  Q
    ||||| ||||||| ||||||||||| || |||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcg 6423952  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 6427183 - 6427223
Alignment:
Q  87 aacaaatgagagaagtcaaagttgtaatattttgggagaaa 127  Q
    ||||| ||||| | |||||||||||||||||||||||||||    
T  6427183 aacaagtgagaaaggtcaaagttgtaatattttgggagaaa 6427223  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 132
Target Start/End: Original strand, 9412143 - 9412171
Alignment:
Q  104 aaagttgtaatattttgggagaaagctcg 132  Q
    |||||||||||||||||||||||||||||    
T  9412143 aaagttgtaatattttgggagaaagctcg 9412171  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 13469714 - 13469655
Alignment:
Q  76 agcaatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 135  Q
    |||||||| ||||||| ||||||| ||||  |||||| | ||||||||||||||||||||    
T  13469714 agcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaa 13469655  T

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Target: scaffold1155 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 1934 - 1853
Alignment:
Q  93 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 174  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  1934 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 1853  T

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Target: scaffold0345 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Original strand, 8282 - 8363
Alignment:
Q  93 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 174  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  8282 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 8363  T

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Target: scaffold0105 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 30697 - 30616
Alignment:
Q  93 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 174  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  30697 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 30616  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
Q  85 ggaacaaatgagagaagtcaaagttgtaatattttgggagaa 126  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  20477496 ggaacaactgagagaggtcaaagttttaatattttgggagaa 20477455  T

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