View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1344_low_2 (Length: 610)

Name: NF1344_low_2
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1344_low_2
NF1344_low_2
[»] chr3 (11 HSPs)
chr3 (16-583)||(30719265-30719823)
chr3 (22-345)||(30701943-30702266)
chr3 (19-347)||(30707126-30707454)
chr3 (489-583)||(30706282-30706376)
chr3 (489-583)||(30699447-30699541)
chr3 (508-583)||(30708922-30708997)
chr3 (363-404)||(1502590-1502631)
chr3 (361-404)||(4946206-4946249)
chr3 (359-396)||(30367629-30367666)
chr3 (359-399)||(19730216-19730256)
chr3 (359-399)||(19750806-19750846)
[»] chr7 (9 HSPs)
chr7 (359-405)||(10893870-10893916)
chr7 (359-396)||(18750888-18750925)
chr7 (359-404)||(44172892-44172937)
chr7 (365-405)||(30013213-30013253)
chr7 (359-398)||(650531-650570)
chr7 (359-398)||(43160496-43160535)
chr7 (359-404)||(21238829-21238874)
chr7 (359-399)||(10893354-10893394)
chr7 (359-399)||(32855366-32855406)
[»] chr8 (3 HSPs)
chr8 (359-398)||(32691755-32691794)
chr8 (359-398)||(31681838-31681877)
chr8 (360-398)||(8917544-8917582)
[»] chr5 (3 HSPs)
chr5 (359-395)||(645344-645380)
chr5 (359-404)||(28322253-28322298)
chr5 (359-399)||(10358115-10358155)
[»] chr4 (8 HSPs)
chr4 (358-398)||(683063-683103)
chr4 (359-398)||(45615423-45615462)
chr4 (360-398)||(9988707-9988745)
chr4 (359-405)||(41989576-41989622)
chr4 (376-405)||(51939141-51939170)
chr4 (359-395)||(8457937-8457973)
chr4 (362-394)||(29388378-29388410)
chr4 (360-392)||(50216696-50216728)
[»] chr6 (3 HSPs)
chr6 (361-404)||(32125175-32125218)
chr6 (359-404)||(6284663-6284708)
chr6 (359-395)||(32125420-32125456)
[»] chr1 (1 HSPs)
chr1 (359-398)||(26462653-26462692)
[»] chr2 (1 HSPs)
chr2 (359-397)||(35198240-35198278)


Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 583
Target Start/End: Complemental strand, 30719823 - 30719265
Alignment:
Q  16 gcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcatcaccggcggaacgcgtggaatcggacatgctatcgtggaagaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  30719823 gcagagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcgtcaccggcggaacacgtggaatcggacatgctatcgtggaagaac 30719724  T
Q  116 tcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatgg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719723 tcgctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatgg 30719624  T
Q  216 atctgtttgtgatgcatcttcttcttctcaaagagaggagcttattcgaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttcc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719623 atctgtttgtgatgcatcttcttcttctcaaagagaggagcttattcaaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttcc 30719524  T
Q  316 ttttctatatattttcttttgcatttctatataattgatgctgaatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtcctacattgga 415  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| ||||||||||||||||    
T  30719523 ttttctatatattttgttttgcatttctatataattgatgctgaatttaagaaaa---------tgaatgtaatcacatgtgtctgtgtcctacattgga 30719433  T
Q  416 tgtctcttcgatcagaagtgtcggtgttatgttatgacttcagctcatatgttgatatgatgttcttgtgagtttaggtgaacaatgctggaacaaatgt 515  Q
    | |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719432 tatctcttcgatcagaagtgtcggtgctatgttatgacttcatctcatatgttgatatgatgttcttgtgagtttaggtgaacaatgctggaacaaatgt 30719333  T
Q  516 gaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctg 583  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30719332 gaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctg 30719265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 22 - 345
Target Start/End: Complemental strand, 30702266 - 30701943
Alignment:
Q  22 agcagtagcagaagctcaagatggtccctcaagggattcactgctctcatcaccggcggaacgcgtggaatcggacatgctatcgtggaagaactcgctg 121  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||| ||||| ||||| ||||||||||| || ||||| ||||    
T  30702266 agcagaagcagaagctcaagatggtccctcaagggattcacagctcttgtcaccggcggaactcgtgggatcggtcatgctatcgtagaggaacttgctg 30702167  T
Q  122 agtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatctgt 221  Q
    |||||||||| | ||| |||||||||||||||||  |||| ||  |||||||| |||||||||||||||| |||||||||||||||||||||||||| ||    
T  30702166 agtttggtgctatagtgtacacttgttctaggaatgaagaagaattgaataaatgcttaaatgagtggaaggagaaaggtttttctgtttatggatcagt 30702067  T
Q  222 ttgtgatgcatcttcttcttctcaaagagaggagcttattcgaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttttct 321  Q
    ||||||||   ||||||||||||||||||| |||||| || |||| ||||||||| ||||||| ||||| ||||||||  |||||||||||| |||||||    
T  30702066 ttgtgatgtgacttcttcttctcaaagagaagagcttgttagaaaagtggcttctgctttcaacggcaagctcaacattcttgtgagttttttcttttct 30701967  T
Q  322 atatattttcttttgcatttctat 345  Q
    ||||||||| ||||||||||||||    
T  30701966 atatattttgttttgcatttctat 30701943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 347
Target Start/End: Complemental strand, 30707454 - 30707126
Alignment:
Q  19 gagagcagtagcagaagctcaagatggtccctcaagggattcactgctctcatcaccggcggaacgcgtggaatcggacatgctatcgtggaagaactcg 118  Q
    ||||||||||  ||| ||||||||||||| |||||||||   ||||||||  | || || ||||| ||||||||||| |||||| | ||||| ||||| |    
T  30707454 gagagcagtatgagaggctcaagatggtctctcaagggaactactgctctagttactggtggaactcgtggaatcggtcatgctgtggtggaggaactag 30707355  T
Q  119 ctgagtttggtgccacagtctacacttgttctaggaaccaagaggagctgaataaacgcttaaatgagtggaaagagaaaggtttttctgtttatggatc 218  Q
    ||||||||||||||||||| | |||||| ||||||||  |||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||    
T  30707354 ctgagtttggtgccacagtgttcacttgctctaggaatgaagaagagctgaataaatgcttaaatgagtggaaagagaagggtttttctgtctatggatc 30707255  T
Q  219 tgtttgtgatgcatcttcttcttctcaaagagaggagcttattcgaaatgtggcttcttctttcaatggcaaactcaacatatttgtgagtttttccttt 318  Q
     ||||||||||| |||||| |||||||||||||||||||||||||| | || |||||| ||||||| ||||| ||||||||| ||||||||||||| |||    
T  30707254 ggtttgtgatgcttcttctccttctcaaagagaggagcttattcgacaagttgcttctgctttcaacggcaagctcaacatacttgtgagtttttctttt 30707155  T
Q  319 tctatatattttcttttgcatttctatat 347  Q
    |||||||||||| |||||||||| |||||    
T  30707154 tctatatattttgttttgcatttgtatat 30707126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 30706376 - 30706282
Alignment:
Q  489 ttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctg 583  Q
    |||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  30706376 ttaggtaaacaatgctggtacaaatgtgaggaagccaacaattgagtatacagccgaagattattcaaaagtgatgactactaacttggattctg 30706282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 489 - 583
Target Start/End: Complemental strand, 30699541 - 30699447
Alignment:
Q  489 ttaggtgaacaatgctggaacaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctg 583  Q
    |||||| ||||||| |||||||||||||||||| |||||||| ||||||||  | ||||||||||| ||| ||||||||| ||||||||||||||    
T  30699541 ttaggtaaacaatgttggaacaaatgtgaggaaaccaacaattgagtatacaacagaagattattcaaaattgatgactattaacttggattctg 30699447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 508 - 583
Target Start/End: Complemental strand, 30708997 - 30708922
Alignment:
Q  508 acaaatgtgaggaagccaacaatcgagtatacggccgaagattattcgaaagtgatgactactaacttggattctg 583  Q
    ||||||||||||||||||||||  ||||| |   |||||||||| || |||||||||| |||||||||||||||||    
T  30708997 acaaatgtgaggaagccaacaagtgagtaaagaaccgaagattactcaaaagtgatgattactaacttggattctg 30708922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 363 - 404
Target Start/End: Original strand, 1502590 - 1502631
Alignment:
Q  363 taagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  1502590 taagaaaatgacataattgaatgtaatcacatgtgtctgtgt 1502631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Complemental strand, 4946249 - 4946206
Alignment:
Q  361 tttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    |||||||||||||  ||||||||||||||||||||||| |||||    
T  4946249 tttaagaaaatgatataattgaatgtaatcacatgtgtctgtgt 4946206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 30367666 - 30367629
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgt 396  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  30367666 aatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 19730256 - 19730216
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtt 399  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  19730256 aatttgagaaaatgacataattgaatgtgatcacatgtgtt 19730216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 19750846 - 19750806
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtt 399  Q
    ||||| |||||||||| ||||||||||| ||||||||||||    
T  19750846 aatttgagaaaatgacataattgaatgtgatcacatgtgtt 19750806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 10893916 - 10893870
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 405  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||    
T  10893916 aatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 396
Target Start/End: Original strand, 18750888 - 18750925
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgt 396  Q
    |||||||||||||||| |||||||||||||||||||||    
T  18750888 aatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 44172937 - 44172892
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||||    
T  44172937 aatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 405
Target Start/End: Original strand, 30013213 - 30013253
Alignment:
Q  365 agaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 405  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  30013213 agaaaatgacgtaattcaatataatcacatgtgtttgtgtc 30013253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 650531 - 650570
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  650531 aatttaagaaaatgacataattgaatgcaatcacatgtgt 650570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 43160496 - 43160535
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  43160496 aatttaagaaaataacataattgaatgtaatcacatgtgt 43160535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 21238829 - 21238874
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    |||||||||||||| |  ||||||||||||||||||||||| ||||    
T  21238829 aatttaagaaaatgtcaaaattgaatgtaatcacatgtgttagtgt 21238874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 10893394 - 10893354
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtt 399  Q
    ||||| |||||||||| ||||||||||||||| ||||||||    
T  10893394 aatttgagaaaatgacataattgaatgtaatcgcatgtgtt 10893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 32855366 - 32855406
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtt 399  Q
    |||||||||||||||  |||||||||||||||| |||||||    
T  32855366 aatttaagaaaatgatttaattgaatgtaatcatatgtgtt 32855406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 398
Target Start/End: Original strand, 32691755 - 32691794
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  32691755 aatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 31681877 - 31681838
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  31681877 aatttaagaaaatgacataattgaatgaaatcacatgtgt 31681838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 8917582 - 8917544
Alignment:
Q  360 atttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtgt 8917544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 645344 - 645380
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatg 395  Q
    |||||||||||||||| ||||||||||||||||||||    
T  645344 aatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 28322253 - 28322298
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    ||||| |||||||||  |||||||||||||||||||||||| ||||    
T  28322253 aatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgt 28322298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 10358115 - 10358155
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtt 399  Q
    |||||||||||||||| ||| |||||||||||| |||||||    
T  10358115 aatttaagaaaatgacataactgaatgtaatcaaatgtgtt 10358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 358 - 398
Target Start/End: Original strand, 683063 - 683103
Alignment:
Q  358 gaatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  683063 gaatttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 45615462 - 45615423
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||||||||||||| |||||||| ||||||||||||||    
T  45615462 aatttaagaaaatgacataattgaacgtaatcacatgtgt 45615423  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 398
Target Start/End: Complemental strand, 9988745 - 9988707
Alignment:
Q  360 atttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  9988745 atttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 405
Target Start/End: Original strand, 41989576 - 41989622
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgtc 405  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||    
T  41989576 aatttaagaaaatgacataattgaatgtaattaactgtgtttgtgtc 41989622  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 405
Target Start/End: Original strand, 51939141 - 51939170
Alignment:
Q  376 taattgaatgtaatcacatgtgtttgtgtc 405  Q
    ||||||||||||||||||||||||||||||    
T  51939141 taattgaatgtaatcacatgtgtttgtgtc 51939170  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 8457937 - 8457973
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatg 395  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  8457937 aatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 362 - 394
Target Start/End: Complemental strand, 29388410 - 29388378
Alignment:
Q  362 ttaagaaaatgacgtaattgaatgtaatcacat 394  Q
    ||||||||||||| |||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacat 29388378  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 360 - 392
Target Start/End: Complemental strand, 50216728 - 50216696
Alignment:
Q  360 atttaagaaaatgacgtaattgaatgtaatcac 392  Q
    ||||||||||||||| |||||||||||||||||    
T  50216728 atttaagaaaatgacataattgaatgtaatcac 50216696  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 404
Target Start/End: Original strand, 32125175 - 32125218
Alignment:
Q  361 tttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    ||||||||||| || ||||||||||||||||||||||| |||||    
T  32125175 tttaagaaaatcacttaattgaatgtaatcacatgtgtatgtgt 32125218  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Complemental strand, 6284708 - 6284663
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgtttgtgt 404  Q
    ||||| |||||||||| ||||||||| |||||||||||||| ||||    
T  6284708 aatttgagaaaatgacataattgaatttaatcacatgtgttagtgt 6284663  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 32125420 - 32125456
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatg 395  Q
    |||||||||||||||| |||| |||||||||||||||    
T  32125420 aatttaagaaaatgacctaatggaatgtaatcacatg 32125456  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 26462692 - 26462653
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtgt 398  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  26462692 aatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 35198278 - 35198240
Alignment:
Q  359 aatttaagaaaatgacgtaattgaatgtaatcacatgtg 397  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  35198278 aatttaagaaaatgaattaattgaatgtaatcacatgtg 35198240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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