View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_20 (Length: 234)
Name: NF1344_low_20
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 41 - 227
Target Start/End: Complemental strand, 44331321 - 44331135
Alignment:
| Q |
41 |
acaattcattcatcaatttcaaatctgcttgatttcacttttcaaaaccctaatttctagttattctaatcgcttcctttacaaatcctttaattattat |
140 |
Q |
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| T |
44331321 |
acaattcattcattaatttcaaatctgcttgatttcacttttcaaaaccctaatttctagttattctaatcgcttcctttacaaatcctttaattattat |
44331222 |
T |
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| Q |
141 |
tgttatttgctataattaatgatcgattcactgcattagtcatatgaacctcaagttagtttagttggagatcgtttgtctgtggtg |
227 |
Q |
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| T |
44331221 |
tgttatttgctataattaatgatggattcactgcattagtcacatgaacctcaagttagtttagttggagatcgtttgtctgtggtg |
44331135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 86 - 227
Target Start/End: Complemental strand, 20153857 - 20153716
Alignment:
| Q |
86 |
aaccctaatttctagttattctaatcgcttcctttacaaatcctttaattattattgttatttgctataattaatgatcgattcactgcattagtcatat |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
20153857 |
aaccctaatttctagttattctaatcgcttcctttacaaatcctttaattattattgttatttgctataattaatgatggattcactgcattagtcacat |
20153758 |
T |
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| Q |
186 |
gaacctcaagttagtttagttggagatcgtttgtctgtggtg |
227 |
Q |
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| T |
20153757 |
gaacctcaagttagtttagttggagatcgtttgtctgtggtg |
20153716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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