View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1344_low_3 (Length: 515)
Name: NF1344_low_3
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 30 - 503
Target Start/End: Complemental strand, 39279015 - 39278543
Alignment:
| Q |
30 |
ctttctttgccaatactcctttaaacccttgtatgcactagcagtgattccttccatatttttctttgatacctttatttgatcttgttttctttgactc |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39279015 |
ctttctttgccaatactcctttaaacccttgtatgcactagcagtgattccttccatatttttctttgatacctt-atttgatcttgttttctttgactc |
39278917 |
T |
|
| Q |
130 |
aatatatgatatagaaataagaaaatggagaaagaaggggtgggtgagagagtgaatgaaaatgcaagaaagataaattagttaggtacatgcagacaga |
229 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39278916 |
aatatatgatatagaaatacgaaaatggagaaagaaggggtgggtgagagagtgaatgaaaatgcaagaaagataaattagttaggtacatgcagacaga |
39278817 |
T |
|
| Q |
230 |
ggaataacacatgggcatggaagctagctatctgctcttgctcataatatatggttatttgattaatttaatattgttagatgtattaattaattaatgt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39278816 |
ggaataacacatgggcatggaagctagctatctgctcttgctcataatatatggttatttgattaatttaatattgttagatgtattaattaattaatgt |
39278717 |
T |
|
| Q |
330 |
tgacataaagaaaatagtttgggtagcaccgaaggtgtgaggtgggggtggtacaataaatgcgacaagtacgtaggttgatgcatttaataacaacgga |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39278716 |
tgacataaagaaaatagtttgggtagcaccgaaggtgtgaggtgggggtggtacaataaatgcgacaagtacgtaggttgatgcatttaataacaacggg |
39278617 |
T |
|
| Q |
430 |
tgtcattttccttcttgcaattgatataatattagatcagttcagataaaggtcgcatgaaccatggttattca |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39278616 |
tgtcattttccttcttgcaattgatataatattagatcagatcagataaaggtcgcatgaaccatggttattca |
39278543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University