View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1344_low_6 (Length: 444)
Name: NF1344_low_6
Description: NF1344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1344_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 9496232 - 9495825
Alignment:
| Q |
9 |
atcatagggagagcaaaatgttgcagctgttggagatgctaaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatg |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496232 |
atcaaagggagagcaaaatgttgcagctgttggagatgctaaaccatttgtactatatgaagaagagaaagcaaccatatcatccactgtcctattcatg |
9496133 |
T |
|
| Q |
109 |
tcagcttcacgcaaagcccataaactgtcatcagagctgagagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496132 |
tcagcttcacgcaaagcccataaactgtcatcagagctgagagagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacac |
9496033 |
T |
|
| Q |
209 |
cgccaccaaagtattgattataatctataccagaaacagcatgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9496032 |
cgccaccaaagtattgattataatctataccagaaacagcatgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgt |
9495933 |
T |
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| Q |
309 |
atttatttggtcaggtaaatctaatgtatccccagagtacctcctttcatcatcatgagttgttgcatcaacctgcatgctgtgaacagccagccctttc |
408 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9495932 |
atttatttggtcaggtaaatccaatgtatccccagagtacctcctttcatcatcatgagttgttgcatcaacctgcatgctgtgaacagccagccctttt |
9495833 |
T |
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| Q |
409 |
gaaaattt |
416 |
Q |
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|||||||| |
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| T |
9495832 |
gaaaattt |
9495825 |
T |
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