View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13450_high_2 (Length: 333)
Name: NF13450_high_2
Description: NF13450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13450_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 42742430 - 42742114
Alignment:
| Q |
1 |
atagtacatgcaggttctttgtgtataaaagaatttgtttttgaaaaaagtcaaataacacaaagattgcataaaaatctattattgttgagaatattaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
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| T |
42742430 |
atagtacatgcaggttctttgtgtataaaagaatttgtttttgaaaaaagtcaaataacacgaagattgcataaaaatctcttatagttgagaatattaa |
42742331 |
T |
|
| Q |
101 |
tcattccaaaaatacaacaatatgtaaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaactcagctgcaacaagttt |
200 |
Q |
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| T |
42742330 |
tcattccaaaaatacaacaatatgtaaacaagggtgagacaatgaggagagatcataataccttaactttgtccatgaagaactcagctgcaacaagttt |
42742231 |
T |
|
| Q |
201 |
cctctgttgtgcccaactttggccattggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaaggtttacccaaattcaaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42742230 |
cctctgttgtgcccaactatggccattggctctcaaaatgccattgccaagcattggcgcaagtttgttagttatataagaaggtttacccaaattcaaa |
42742131 |
T |
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| Q |
301 |
gtgatacactggttcat |
317 |
Q |
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|| |||||||||||||| |
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| T |
42742130 |
gtaatacactggttcat |
42742114 |
T |
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