View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13450_high_3 (Length: 250)
Name: NF13450_high_3
Description: NF13450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13450_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 42742651 - 42742429
Alignment:
| Q |
19 |
ttatgtgtcttgaggttacaacgttaaaccgctgagttgacacctcttggacactaatgacacattaatacattattataaatgtacttatctttataat |
118 |
Q |
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| T |
42742651 |
ttatgtgtcttgaggttacaacgttaaaccgctgagttgacacctcttggacactaatgacacatta--------ttataaatgtacttatctttataat |
42742560 |
T |
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| Q |
119 |
gtatcttagataaataagtcatatatagaaaatggattaagaatttaaaattaattataatgttaattgtgtgcctaaacttatttaattgtaatttttg |
218 |
Q |
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| T |
42742559 |
gtatcttagataaataagtgatatatagaaaatggattaagaatttaaaattaattataatgttaattgtgtgcctgaacttatttaattgtaatttttg |
42742460 |
T |
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| Q |
219 |
taaaggtattgtcaagagtgtgtgggttcat |
249 |
Q |
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| T |
42742459 |
taaaggtattgtcaagagtgtgtgggttcat |
42742429 |
T |
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