View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13451_high_10 (Length: 324)
Name: NF13451_high_10
Description: NF13451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13451_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 15075934 - 15076246
Alignment:
| Q |
10 |
gcaaagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagattacaatcatcatgtttcaatgtcttaatgctgaa |
109 |
Q |
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| T |
15075934 |
gcaaagggttttgaaggtaaaggagaaagtgaaaaaactaaggaagggcaacagggaaaatgagattacaatcatcatgtttcaatgtattaatgctgaa |
15076033 |
T |
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| Q |
110 |
gaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaagtgg |
209 |
Q |
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| T |
15076034 |
gaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaactgatagaagattggaaaaagtgg |
15076133 |
T |
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| Q |
210 |
ataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctatggtt |
309 |
Q |
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| T |
15076134 |
ataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaatgacaccaccaccaacaatttatagattaaatattctatggtt |
15076233 |
T |
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| Q |
310 |
gtttagggttggt |
322 |
Q |
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| T |
15076234 |
gtttagggttggt |
15076246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 322
Target Start/End: Original strand, 15073137 - 15073453
Alignment:
| Q |
10 |
gcaaagggttttgaaggctaaggagaaagtgaaaaaactaaggaagggcaacagagagaatgagattacaatcatcatgtttcaatgtcttaa----tgc |
105 |
Q |
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| T |
15073137 |
gcaacgggttttgaaggctaaggagaaagtggaaaaactaaggaagggaaacagggagcaagagatgacaatgatcatgtttcaatgtcttaattaatgc |
15073236 |
T |
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| Q |
106 |
tgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaaccgatagaagattggaaaaa |
205 |
Q |
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| T |
15073237 |
tgaaaaaattatgcacgatgatacgtcaatgattgatttgaatgttcttgcttggttgattgatcaaaatttgaaggatattcatagaagattggaagaa |
15073336 |
T |
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| Q |
206 |
gtggataataatggtcatataaatcaagtcatgactactcaaagttaagttcaactccaaaagacaccaccaccaacaatttatagattaaatattctat |
305 |
Q |
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| T |
15073337 |
gtggataataatggtcatccaagtcaagtcatgactactcaaagttaagttcaacttcaaatgacgccaccaccaacaatttatagattaaatattctat |
15073436 |
T |
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| Q |
306 |
ggttgtttagggttggt |
322 |
Q |
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| T |
15073437 |
ggttgcttagggttggt |
15073453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 13308514 - 13308670
Alignment:
| Q |
86 |
atgtttcaatgtcttaatgctgaagaaattgtgcacaatgatatgtcaatgattgatttgaatgatcttgcttggttgattgaccaaaatttgaaggaaa |
185 |
Q |
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| T |
13308514 |
atgtttcaatgcctgaatgcagggaaaattgtggacaacaatatgtcaatggttgatgtgaataatcttgcttggttgattgaccaaaatttgaaggaca |
13308613 |
T |
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| Q |
186 |
ccgatagaagattggaaaaagtggataataatggtcatataaatcaagtcatgactactc |
245 |
Q |
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| T |
13308614 |
ttggaagaaggttggaagcagtggacaataatggtca---aaatcaaatcatgactactc |
13308670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 11096173 - 11096217
Alignment:
| Q |
139 |
tgatttgaatgatcttgcttggttgattgaccaaaatttgaagga |
183 |
Q |
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| T |
11096173 |
tgatttgagtgatctttcttggttgattgaccataatttgaagga |
11096217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 183
Target Start/End: Original strand, 11106879 - 11106912
Alignment:
| Q |
150 |
atcttgcttggttgattgaccaaaatttgaagga |
183 |
Q |
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| T |
11106879 |
atcttgcttggttgattgaccacaatttgaagga |
11106912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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