View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13451_high_12 (Length: 317)

Name: NF13451_high_12
Description: NF13451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13451_high_12
NF13451_high_12
[»] chr6 (1 HSPs)
chr6 (165-307)||(14544417-14544560)
[»] chr4 (2 HSPs)
chr4 (165-307)||(507931-508074)
chr4 (165-289)||(18040580-18040702)
[»] chr3 (1 HSPs)
chr3 (165-307)||(9292975-9293118)
[»] chr7 (2 HSPs)
chr7 (165-307)||(6931866-6932010)
chr7 (217-302)||(29732419-29732504)
[»] chr5 (1 HSPs)
chr5 (165-307)||(26290539-26290684)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 14544417 - 14544560
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  14544417 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct 14544516  T
Q  264 ttctgggatcgggtattatattaggaagtctaggagtagtatta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14544517 ttctgggatcgggtattatattaggaagtctaggagtagtatta 14544560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 507931 - 508074
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  507931 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct 508030  T
Q  264 ttctgggatcgggtattatattaggaagtctaggagtagtatta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  508031 ttctgggatcgggtattatattaggaagtctaggagtagtatta 508074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 165 - 289
Target Start/End: Complemental strand, 18040702 - 18040580
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnnacatataatggatttgcctgaaacgctacacgattttcttttagtctt 264  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  18040702 cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttacatataatggatt-gcctgaaacgctacacgattttcttt-agtctt 18040605  T
Q  265 tctgggatcgggtattatattagga 289  Q
    |||||||||||||||||||||||||    
T  18040604 tctgggatcgggtattatattagga 18040580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 165 - 307
Target Start/End: Complemental strand, 9293118 - 9292975
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn-acatataatggatttgcctgaaacgctacacgattttcttttagtct 263  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  9293118 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtct 9293019  T
Q  264 ttctgggatcgggtattatattaggaagtctaggagtagtatta 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9293018 ttctgggatcgggtattatattaggaagtctaggagtagtatta 9292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 6931866 - 6932010
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn--acatataatggatttgcctgaaacgctacacgattttcttttagtc 262  Q
    |||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||    
T  6931866 cctggtcatatcaatacggtcatgaaatttcgatttctttgtctttttttttttacatataatggatttgcctgaaacgctacacgattttcttttagtc 6931965  T
Q  263 tttctgggatcgggtattatattaggaagtctaggagtagtatta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6931966 tttctgggatcgggtattatattaggaagtctaggagtagtatta 6932010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 29732419 - 29732504
Alignment:
Q  217 acatataatggatttgcctgaaacgctacacgattttcttttagtctttctgggatcgggtattatattaggaagtctaggagtag 302  Q
    |||||||||||||||| | ||||| ||||||||||||| |||| | |||||| |||| ||| |||||||||||||| || ||||||    
T  29732419 acatataatggatttgtccgaaacactacacgattttcatttaatgtttctgagatcaggtcttatattaggaagtttaagagtag 29732504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 165 - 307
Target Start/End: Original strand, 26290539 - 26290684
Alignment:
Q  165 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcnnnnnnnnn---acatataatggatttgcctgaaacgctacacgattttcttttagt 261  Q
    |||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||| |||||| |||||||||||||||||||||    
T  26290539 cctggtcatatcaatacggtcatgaaatttcgatttctttgtcttttttttttttacatataatggatttgtctgaaatgctacacgattttcttttagt 26290638  T
Q  262 ctttctgggatcgggtattatattaggaagtctaggagtagtatta 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26290639 ctttctgggatcgggtattatattaggaagtttaggagtagtatta 26290684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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