View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13451_high_15 (Length: 302)

Name: NF13451_high_15
Description: NF13451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13451_high_15
NF13451_high_15
[»] chr4 (10 HSPs)
chr4 (13-302)||(510810-511099)
chr4 (13-302)||(18086838-18087127)
chr4 (13-145)||(31316911-31317043)
chr4 (13-145)||(33689089-33689220)
chr4 (13-145)||(25422433-25422565)
chr4 (13-145)||(53571337-53571469)
chr4 (13-145)||(10322066-10322198)
chr4 (13-145)||(44209292-44209424)
chr4 (18-139)||(11670476-11670597)
chr4 (20-145)||(35060734-35060861)
[»] chr7 (11 HSPs)
chr7 (13-302)||(6934748-6935037)
chr7 (13-145)||(46044084-46044217)
chr7 (15-143)||(15131074-15131202)
chr7 (13-145)||(38199417-38199549)
chr7 (13-145)||(33625155-33625286)
chr7 (13-92)||(44167551-44167630)
chr7 (13-145)||(46331114-46331249)
chr7 (13-145)||(43083642-43083777)
chr7 (13-145)||(45958519-45958652)
chr7 (13-145)||(3496014-3496150)
chr7 (106-145)||(44167680-44167719)
[»] chr3 (9 HSPs)
chr3 (13-145)||(45235135-45235267)
chr3 (13-145)||(32943359-32943492)
chr3 (13-145)||(44557370-44557501)
chr3 (13-145)||(50614873-50615005)
chr3 (13-145)||(37179311-37179445)
chr3 (13-145)||(32147348-32147482)
chr3 (13-145)||(117238-117371)
chr3 (13-141)||(53397455-53397583)
chr3 (13-141)||(53439667-53439795)
[»] scaffold0651 (1 HSPs)
scaffold0651 (13-145)||(6655-6787)
[»] chr6 (3 HSPs)
chr6 (13-145)||(17245951-17246083)
chr6 (13-145)||(5079296-5079431)
chr6 (101-145)||(18502902-18502946)
[»] chr2 (8 HSPs)
chr2 (13-145)||(18672561-18672693)
chr2 (13-145)||(21439624-21439756)
chr2 (13-142)||(44493252-44493382)
chr2 (13-145)||(43932557-43932691)
chr2 (28-145)||(20720308-20720425)
chr2 (13-145)||(42487465-42487596)
chr2 (13-68)||(3105544-3105599)
chr2 (101-142)||(3104995-3105036)
[»] chr1 (11 HSPs)
chr1 (13-126)||(40182032-40182145)
chr1 (13-145)||(12368031-12368163)
chr1 (13-145)||(37986537-37986669)
chr1 (16-145)||(30982177-30982306)
chr1 (13-142)||(46596567-46596697)
chr1 (13-145)||(12000088-12000221)
chr1 (13-145)||(15054024-15054159)
chr1 (13-145)||(29231475-29231609)
chr1 (13-145)||(33708733-33708869)
chr1 (13-145)||(36248696-36248830)
chr1 (13-145)||(36362895-36363030)
[»] chr5 (7 HSPs)
chr5 (13-145)||(26865499-26865631)
chr5 (13-145)||(38693262-38693394)
chr5 (13-145)||(41139395-41139528)
chr5 (13-145)||(13920401-13920532)
chr5 (13-145)||(8217803-8217936)
chr5 (13-145)||(43440669-43440801)
chr5 (103-145)||(18950752-18950794)
[»] chr8 (12 HSPs)
chr8 (13-145)||(24451852-24451984)
chr8 (13-145)||(37706548-37706679)
chr8 (13-145)||(39337352-39337485)
chr8 (13-145)||(16473352-16473483)
chr8 (13-145)||(16477923-16478054)
chr8 (13-145)||(35369557-35369687)
chr8 (17-145)||(36063228-36063358)
chr8 (13-145)||(35863408-35863541)
chr8 (13-145)||(21135686-21135820)
chr8 (17-92)||(13323522-13323597)
chr8 (13-65)||(41280613-41280665)
chr8 (101-143)||(41281180-41281222)
[»] scaffold0003 (1 HSPs)
scaffold0003 (13-145)||(239805-239936)
[»] scaffold0148 (1 HSPs)
scaffold0148 (13-145)||(35611-35742)
[»] scaffold0385 (1 HSPs)
scaffold0385 (13-145)||(9752-9884)
[»] scaffold0002 (1 HSPs)
scaffold0002 (142-238)||(172616-172712)
[»] scaffold0097 (1 HSPs)
scaffold0097 (28-145)||(24146-24263)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 510810 - 511099
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  510810 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagttttttttggaataattact 510909  T
Q  113 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctatcttacggcaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  510910 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctattttacggcaga 511009  T
Q  213 tgttctatggatacaagttttttaatacaccaaactcttannnnnnngattctggcccgagagaattatttatttcgatttctatcctta 302  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||    
T  511010 tgttctatggatacaagttttttaatacaccaaactcttatttttttgattctgggccgagagaattatttatttcgatttctatcctta 511099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 302
Target Start/End: Complemental strand, 18087127 - 18086838
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  18087127 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagttttttttggaataattact 18087028  T
Q  113 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctatcttacggcaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  18087027 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctattttacggcaga 18086928  T
Q  213 tgttctatggatacaagttttttaatacaccaaactcttannnnnnngattctggcccgagagaattatttatttcgatttctatcctta 302  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||    
T  18086927 tgttctatggatacaagttttttaatacaccaaactcttatttttttgattctgggccgagagaattatttatttcgatttctatcctta 18086838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 31317043 - 31316911
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||| ||| ||||||||||||||||||||||        ||||||||||||    
T  31317043 aatattcacgattttcactatcttatcgatcacttctcttgcattgtcgggcacgagtggttttgttgccgaattgatagttttttttggaataattact 31316944  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  31316943 agtcaaaaatatcttttcatgatgaaaatacta 31316911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 33689089 - 33689220
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||        ||||||||||||    
T  33689089 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatag-tttttttggaataattact 33689187  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||| |||||||||||    
T  33689188 agtcaaaaatatcttttcatggtgaaaatacta 33689220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 25422565 - 25422433
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||| | |||||||| ||||||||||||||||||||||        ||||||||||||    
T  25422565 aatattcacgattttcactatcttatcgatgtctttttttgcattgtctggcatgagtggttttgttgccgaattgatagttttttttggaataattact 25422466  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  25422465 agtcaaaaatatcttttcatgatgaaaatacta 25422433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 53571337 - 53571469
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||||||||||||| |||||||| ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||        ||||||||||||    
T  53571337 aatattcacgattttcaccatcttatcaatgacttcttttgcattgtcgggcatgagtggttttgttgccgaattgatagttttttttggaataattact 53571436  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  53571437 agtcaaaaatatcttttcatgatgaaaatacta 53571469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 10322198 - 10322066
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||| ||||||||||         ||||||||| |    
T  10322198 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggtatgagtggttttgttgctgaattgatagttttttttagaataattaat 10322099  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||| ||||||||||||||||    
T  10322098 agtcaaaaatatctttacatgatgaaaatacta 10322066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 44209292 - 44209424
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| || |||||||||||||| ||||         ||||||||||     
T  44209292 aatattcacgatttttactatcttatcgatgacttctcttgcattgtcgggcatgagtggctttgttgccgaatttatagtttttttttgaataattacc 44209391  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||| |||||||||    
T  44209392 agtcaaaaatatcttttcatgattaaaatacta 44209424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 11670597 - 11670476
Alignment:
Q  18 tcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattactagtca 117  Q
    |||||||||||||||||||||||||| ||||| |||||||| | | |||||| ||||||||||||||||||||||        |||||||||||||||||    
T  11670597 tcacgattttcactatcttatcgatgacttcttttgcattgtcagacatgagtggttttgttgccgaattgatagttttttttggaataattactagtca 11670498  T
Q  118 aaaatatcttttcatgatgaaa 139  Q
    ||||||| ||||||||||||||    
T  11670497 aaaatatattttcatgatgaaa 11670476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 35060734 - 35060861
Alignment:
Q  20 acgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag--nnnnnnnnggaataattactagtca 117  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||||| | ||||||||||||||| ||||||          |||||||||| ||||||    
T  35060734 acgattttcgctatcttatcgatgacttctcttgcattgtcgggcatgggtggttttgttgccgaactgatagttttttttttggaataattattagtca 35060833  T
Q  118 aaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||    
T  35060834 aaaatatcttttcatgatgaaaatacta 35060861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 6934748 - 6935037
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||        ||||||||||||    
T  6934748 aatattcacgattttcactatcttatcgatggcttctcttgcattgtcgggcatgagcggttttgttgccgaattgatagttttttttggaataattact 6934847  T
Q  113 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctatcttacggcaga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6934848 agtcaaaaatatcttttcatgatgaaaatactaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctattttacggcaga 6934947  T
Q  213 tgttctatggatacaagttttttaatacaccaaactcttannnnnnngattctggcccgagagaattatttatttcgatttctatcctta 302  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||    
T  6934948 tgttctatggatacaagttttttaatacaccaaactcttatttttttgattctgggccgagagaattatttatttcgatttctatcctta 6935037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 46044084 - 46044217
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||         ||||||||||     
T  46044084 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatagtttttttttggaataattat 46044183  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||||||||    
T  46044184 tagtcaaaaatatcttttcatgatgaaaatacta 46044217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 15131202 - 15131074
Alignment:
Q  15 tattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattactag 114  Q
    ||||||||||||||||||||||||||||| ||| | |||||||| |||||||||| |||||||||||||||||||||         ||||||||||||||    
T  15131202 tattcacgattttcactatcttatcgatgacttatgttgcattgtcgggcatgagtggttttgttgccgaattgataattttttttggaataattactag 15131103  T
Q  115 tcaaaaatatcttttcatgatgaaaatac 143  Q
    |||||||||||||||||||||||||||||    
T  15131102 tcaaaaatatcttttcatgatgaaaatac 15131074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 38199549 - 38199417
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||| |||||||||| |||||| ||||        ||||||||||||    
T  38199549 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcaggcatgagtggttttgttgacgaattaatagttttttttggaataattact 38199450  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  38199449 agtcaaaaatatcttttcatgatgaaaatacta 38199417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 33625286 - 33625155
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||  |||||||||| ||||||||||||||||||||||        ||||||||||||    
T  33625286 aatattcacgattttcactatcttatcgatgacttcttttgcattatcgggcatgagtggttttgttgccgaattgatag-tttttttggaataattact 33625188  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||| ||||||||||||||||||    
T  33625187 agtcaaaaatatctcttcatgatgaaaatacta 33625155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 44167551 - 44167630
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag 92  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||    
T  44167551 aatattcacgattttcattatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatag 44167630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 46331249 - 46331114
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag----nnnnnnnnggaataat 108  Q
    |||||||| |||||||||||||||||||||| |||||||||||||  |||||||||| ||||| ||||||||||||||||            ||||||||    
T  46331249 aatattcatgattttcactatcttatcgatgacttctcttgcattttcgggcatgagtggtttggttgccgaattgatagttttttctttttggaataat 46331150  T
Q  109 tactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||| |||||||||||||||||||    
T  46331149 tactagtcaaaaatatc-tttcatgatgaaaatacta 46331114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 43083642 - 43083777
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag---nnnnnnnnggaataatt 109  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||| | ||||||||||||||||||||           |||||||||    
T  43083642 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcggacatgagtgattttgttgccgaattgatagtttttttttttggaataatt 43083741  T
Q  110 actagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||| | ||||||| ||||||||||||||    
T  43083742 actagtcaaaagtttcttttcttgatgaaaatacta 43083777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 45958519 - 45958652
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    |||||| || ||||||||||||||||||||| ||||||||||||||   |||||||| | ||||||||||||||||||||         ||| |||||||    
T  45958519 aatattaacaattttcactatcttatcgatgacttctcttgcattgtgaggcatgagtgattttgttgccgaattgatagtttttttttggagtaattac 45958618  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||| |||||||||||    
T  45958619 tagtcaaaaatatcttttcatggtgaaaatacta 45958652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 3496150 - 3496014
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcatt----gccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataat 108  Q
    |||||||| |||||||||||| ||||||||| ||||| |||||||    | |||||||||| ||||||||||||||||||||||        ||||||||    
T  3496150 aatattcatgattttcactattttatcgatgacttcttttgcattaattgtcgggcatgagtggttttgttgccgaattgatagttttttatggaataat 3496051  T
Q  109 tactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||| |||||||||| ||||| ||||||||||||||    
T  3496050 tactaatcaaaaatatattttcctgatgaaaatacta 3496014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 44167680 - 44167719
Alignment:
Q  106 aattactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  44167680 aattactagtcaaaaatatatttttatgatgaaaatacta 44167719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 45235135 - 45235267
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||        ||||||||| ||    
T  45235135 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatagttttttttggaataattgct 45235234  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  45235235 agtcaaaaatatcttttcatgatgaaaatacta 45235267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 32943492 - 32943359
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||         |||||||||||    
T  32943492 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatagtttttttttggaataattac 32943393  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||| ||||||||||||||||||||    
T  32943392 tagtcaaaaatatattttcatgatgaaaatacta 32943359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 44557370 - 44557501
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||  |||||||||||||||||||||        ||||||||||||    
T  44557370 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcgggcatgagtagttttgttgccgaattgatag-tttttttggaataattact 44557468  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  44557469 agtcaaaaatatcttttcatgatgaaaatacta 44557501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 50614873 - 50615005
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||| ||||||||||||||||||||||        ||||||||||||    
T  50614873 aatattcacgattttcactatcttatcaatgacttcttttgcattgtcgggcatgagtggttttgttgccgaattgatagttttttttggaataattact 50614972  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||| ||||| ||||||||||||||    
T  50614973 agtcaaaaatatattttcttgatgaaaatacta 50615005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 37179445 - 37179311
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag--nnnnnnnnggaataatta 110  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||||||||||||||           |||||||||    
T  37179445 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgattggttttgttgccgaattgatagtttctttttttgaataatta 37179346  T
Q  111 ctagtcaaaaatatcttttcatgatgaaaatacta 145  Q
     ||||||||||||||||||||||||||||||||||    
T  37179345 ttagtcaaaaatatcttttcatgatgaaaatacta 37179311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 32147482 - 32147348
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag----nnnnnnnnggaataat 108  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |  ||||||| ||||||||||||||||||||||            ||||||||    
T  32147482 aatattcacgattttcactatcttatcgatgacttctcttgcattgtc--gcatgagtggttttgttgccgaattgatagttttttttttttggaataat 32147385  T
Q  109 tactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||| ||||||||||||||||||||    
T  32147384 tactagtcaaaaatatattttcatgatgaaaatacta 32147348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 117238 - 117371
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| | ||| |||||||| | |||||||| |||||||||  |||||||||||         |||||||||||    
T  117238 aatattcacgattttcactatcttatcgatgacatcttttgcattgtcaggcatgagaggttttgttatcgaattgatagtttttttttggaataattac 117337  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||| ||||||||||||||||||||    
T  117338 tagtcaaaaatatattttcatgatgaaaatacta 117371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 53397583 - 53397455
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||| ||||||| |||||||| ||||  ||||||||||||| |||||||||| | ||||||||||||||||||||        ||| || |||||    
T  53397583 aatattcacaattttcattatcttattgatgatttctcttgcattgtcgggcatgagtgattttgttgccgaattgatagttttttttggagtagttact 53397484  T
Q  113 agtcaaaaatatcttttcatgatgaaaat 141  Q
    |||||||||||| ||||||||||||||||    
T  53397483 agtcaaaaatattttttcatgatgaaaat 53397455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 53439795 - 53439667
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||| ||||||| |||||||| |||| ||||||||||||||  || |||||| ||||||||||||||||||||||        ||| || ||| |    
T  53439795 aatattcacaattttcattatcttattgatgacttctcttgcattgttggacatgagtggttttgttgccgaattgatagttttttttggagtagttatt 53439696  T
Q  113 agtcaaaaatatcttttcatgatgaaaat 141  Q
    ||| |||||||||||||||||||||||||    
T  53439695 agttaaaaatatcttttcatgatgaaaat 53439667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 6655 - 6787
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||  |||||||||||||| |||||| ||| ||||||||||||||||||||||        ||||||||||||    
T  6655 aatattcacgattttcactatcttatcgatcacttctcttgcattgtcgggcacgagtggttttgttgccgaattgatagttttttttggaataattact 6754  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  6755 agtcaaaaatatcttttcatgatgaaaatacta 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 17246083 - 17245951
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||        |||||||||| |    
T  17246083 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcgggcatgagtggttttgttgccgaattgatagttttttttggaataattaat 17245984  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  17245983 agtcaaaaatatcttttcatgatgaaaatacta 17245951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 5079296 - 5079431
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag---nnnnnnnnggaataatt 109  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||           |||||||||    
T  5079296 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcggacatgagtggttttgttgccgaattgatagtttttttttttggaataatt 5079395  T
Q  110 actagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||| |||||||||||||||    
T  5079396 actagtcaaaaatatctttttatgatgaaaatacta 5079431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 18502902 - 18502946
Alignment:
Q  101 ggaataattactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  18502902 ggaataattattagtcaaaaatatcttttcatgatgaaaatacta 18502946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 18672693 - 18672561
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||||||||        ||||||||||||    
T  18672693 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcggacatgagtggttttgttgccgaattgatagttttttttggaataattact 18672594  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||| |||||||||    
T  18672593 agtcaaaaatatcttttcatgataaaaatacta 18672561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 21439624 - 21439756
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||| | ||||||||||||||||||||        ||||||||||||    
T  21439624 aatattcacgattttcattatcttatcgatgacttcttttgcattgtcgggcatgagtgattttgttgccgaattgatagttttttttggaataattact 21439723  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  21439724 agtcaaaaatatcttttcatgatgaaaatacta 21439756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 44493382 - 44493252
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||         |||||||||||    
T  44493382 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttttgttgccgaattgatagtttttttttggaataattac 44493283  T
Q  112 tagtcaaaaatatcttttcatgatgaaaata 142  Q
    ||||||||||||| |||||||||||||||||    
T  44493282 tagtcaaaaatatattttcatgatgaaaata 44493252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 43932557 - 43932691
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag--nnnnnnnnggaataatta 110  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||||||          ||||||||||    
T  43932557 aatattcatgattttcactatcttatcgatgacttctcttgcattgtcgggtatgagtggttttgttgcctaattgatagttttttttttggaataatta 43932656  T
Q  111 ctagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||||    
T  43932657 ctagtcaaaaatatcttttcatgatgaaaatacta 43932691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 20720425 - 20720308
Alignment:
Q  28 cactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattactagtcaaaaatatctt 127  Q
    |||||||||||||||| |||||||||||||| ||| |||||| | ||||||||||||||||||||        ||| |||||||||||||||||||||||    
T  20720425 cactatcttatcgatgacttctcttgcattgtcggacatgagtgattttgttgccgaattgatagtcttttttggagtaattactagtcaaaaatatctt 20720326  T
Q  128 ttcatgatgaaaatacta 145  Q
    ||||||||||||||||||    
T  20720325 ttcatgatgaaaatacta 20720308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 42487465 - 42487596
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||||||||||||| |||||||| ||| |||||||||||||| || ||||||| || |||||||| ||||||||||         |||| ||||||    
T  42487465 aatattcacgattttcaccatcttatcaatgacttctcttgcattgtcgagcatgagtggctttgttgctgaattgatagtttttatttgaat-attact 42487563  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  42487564 agtcaaaaatatcttttcatgatgaaaatacta 42487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 3105599 - 3105544
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatga 68  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||    
T  3105599 aatattcaagattttcactatcttatcgatgacttctcttgcattgtcgggcatga 3105544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 142
Target Start/End: Complemental strand, 3105036 - 3104995
Alignment:
Q  101 ggaataattactagtcaaaaatatcttttcatgatgaaaata 142  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3105036 ggaataattactagtcaaaaatatcttttcatgatgaaaata 3104995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 40182145 - 40182032
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||    
T  40182145 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccaaattgatagttttttttggaataattact 40182046  T
Q  113 agtcaaaaatatct 126  Q
    ||||||||||||||    
T  40182045 agtcaaaaatatct 40182032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 12368031 - 12368163
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||| ||||||||||||||||||||||        |||||||||| |    
T  12368031 aatattcacgattttcactatcttatcgatgacttcttttgcattgtctggcatgagtggttttgttgccgaattgatagttttttttggaataattatt 12368130  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  12368131 agtcaaaaatatcttttcatgatgaaaatacta 12368163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 37986537 - 37986669
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||| | |||||||| ||||||||||  ||||||||||        ||||||||||||    
T  37986537 aatattcacgattttcactatcttatcgatgactttttttccattgtcaggcatgagtggttttgttgttgaattgatagttttttttggaataattact 37986636  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  37986637 agtcaaaaatatcttttcatgatgaaaatacta 37986669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 30982177 - 30982306
Alignment:
Q  16 attcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattactag 114  Q
    |||||| ||||||||||||||||||||| |||||||||||||| ||||| || | ||||||||||||||||||||||         ||||||||||||||    
T  30982177 attcacaattttcactatcttatcgatgacttctcttgcattg-cgggcgtgggtggttttgttgccgaattgatagtttttttttggaataattactag 30982275  T
Q  115 tcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||    
T  30982276 tcaaaaatatcttttcatgatgaaaatacta 30982306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 46596567 - 46596697
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgata-gnnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | |||||||| ||||| |||||| ||||||||          |||||||||||    
T  46596567 aatattcacgattttcactatcttatcgatgacttctcttgcattgtccggcatgagtggtttggttgcctaattgatattttttttttggaataattac 46596666  T
Q  112 tagtcaaaaatatcttttcatgatgaaaata 142  Q
    || ||||||||||||||||||||||||||||    
T  46596667 taatcaaaaatatcttttcatgatgaaaata 46596697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 12000221 - 12000088
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||||| |||| ||||| |||||||||||| |||| ||||         |||||||||||    
T  12000221 aatattctcgattttcactatcttatcaatgacttctcttgcattgtcgggtatgagtggttttgttgccaaattcatagtttttttttggaataattac 12000122  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||| |||||||||||||||||||||||||||||    
T  12000121 tagtaaaaaatatcttttcatgatgaaaatacta 12000088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 15054159 - 15054024
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag---nnnnnnnnggaataatt 109  Q
    |||||||||||||||||||||| ||| ||||  |||| |||||||| |||| ||||| ||||||||||||||||||||||           |||||||||    
T  15054159 aatattcacgattttcactatcatattgatgatttcttttgcattgtcgggtatgagtggttttgttgccgaattgatagttttttttgttggaataatt 15054060  T
Q  110 actagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  15054059 actagtcaaaaatatcttttcatgatgaaaatacta 15054024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 29231609 - 29231475
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag--nnnnnnnnggaataatta 110  Q
    ||||||||| ||||||||||||||||||||| ||||| |||||||| ||| |||||| | |||| |||||||||||||||          ||||||||||    
T  29231609 aatattcactattttcactatcttatcgatgacttcttttgcattgtcggacatgagtgattttcttgccgaattgatagttttttttttggaataatta 29231510  T
Q  111 ctagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||| |||||||||||||||||||||||||||||    
T  29231509 ctagtaaaaaatatcttttcatgatgaaaatacta 29231475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 33708733 - 33708869
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag----nnnnnnnnggaataat 108  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| ||| |||||| |||||||||||||||||| |||            | ||||||    
T  33708733 aatattcacgattttcactatcttatcgatgagttctcttgcattgtcggacatgagtggttttgttgccgaattggtagttttttttttttgaaataat 33708832  T
Q  109 tactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33708833 tactagtcaaaaatatattttcatgatgaaaatacta 33708869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 36248830 - 36248696
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattga-tag-nnnnnnnnggaataatta 110  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||  ||||| ||||||||||||||||||| |||         ||||||||||    
T  36248830 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcggatatgagtggttttgttgccgaattgattagtttttttttggaataatta 36248731  T
Q  111 ctagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||| | ||||||||||||||||||    
T  36248730 ctagtcaaaaatatatgttcatgatgaaaatacta 36248696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 36362895 - 36363030
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag---nnnnnnnnggaataatt 109  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||| |  ||||||| |||||||||| |||||||||||           ||| || ||    
T  36362895 aatattcacaattttcattatcttatcgatgacttctcttgcattgtcaagcatgagtggttttgttgtcgaattgatagtttttttttttggagtagtt 36362994  T
Q  110 actagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36362995 actagtcaaaaatatcttttcgtgatgaaaatacta 36363030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 26865499 - 26865631
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||||        ||||||||||||    
T  26865499 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcgggcatgagtggttttgttgcccaattgatagttttttttggaataattact 26865598  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||| |||||||||||||||||||||||||||||    
T  26865599 agtaaaaaatatcttttcatgatgaaaatacta 26865631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 38693262 - 38693394
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||| ||||||||||| ||||||||||        ||||||||| ||    
T  38693262 aatattcacgattttcactatattatcgatgacttctcttgcattgtcgagcatgagtggttttgttgctgaattgatagttttttttggaataatttct 38693361  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  38693362 agtcaaaaatatcttttcatgatgaaaatacta 38693394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 41139528 - 41139395
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||||||         |||||||||||    
T  41139528 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggtatgagtggttttgttgccaaattgatagtttttttttggaataattac 41139429  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||| ||||||||||||||||||||||||||||    
T  41139428 tagtcgaaaatatcttttcatgatgaaaatacta 41139395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 13920532 - 13920401
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||||||        | ||||||||||    
T  13920532 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggtatgagtggttttgttgcctaattgatag-tttttttgaaataattact 13920434  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||| |||||||||||||||    
T  13920433 agtcaaaaatatctttttatgatgaaaatacta 13920401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 8217803 - 8217936
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||  | ||||||||||||||||||||         |||||| ||||    
T  8217803 aatattcacgattttcactatcttatcgatgacttctcttgcattgttgggcatgaatgattttgttgccgaattgatagtttttttttggaatatttac 8217902  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||||||||    
T  8217903 tagtcaaaaatatcttttcatgatgaaaatacta 8217936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 43440669 - 43440801
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||| |||||||||| ||||  || |||||||||| | |||||||| |  |||||||||||||||||||        ||||||||||||    
T  43440669 aatattcacgatttttactatcttattgatgatttatcttgcattgtccggcatgagtgactttgttgccgaattgatagtttttattggaataattact 43440768  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||| || ||||||||||||    
T  43440769 agtcaaaaatatctttttatcatgaaaatacta 43440801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 18950752 - 18950794
Alignment:
Q  103 aataattactagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  18950752 aataaataccagtcaaaaatatcttttcatgatgaaaatacta 18950794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 24451984 - 24451852
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||  ||||||||||| ||||||||||        ||||||||||||    
T  24451984 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggcatgaatggttttgttgctgaattgatagttttttttggaataattact 24451885  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
     |||||||||||||||||||| |||||||||||    
T  24451884 ggtcaaaaatatcttttcatgctgaaaatacta 24451852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 37706548 - 37706679
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||| |||||||||         |||||||||||    
T  37706548 aatattcacgattttcactatcttatcgatgacttctcttgcattgtcgggtatgagtggttttgttgcctaattgatagtttttttt-gaataattact 37706646  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||    
T  37706647 agtcaaaaatatcttttcatgatgaaaatacta 37706679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 39337485 - 39337352
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgata-gnnnnnnnnggaataattac 111  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||| |||||||||| | ||||||||||||||||||| |        |||||||||||    
T  39337485 aatattcacgattttcactatcttatcgatgacttattttgaattgtcgggcatgagtgattttgttgccgaattgataggttttttttggaataattac 39337386  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||||||||    
T  39337385 tagtcaaaaatatcttttcatgatgaaaatacta 39337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 16473483 - 16473352
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||  | ||||||||||||||||||||         |||||||||||    
T  16473483 aatattcacgattttcactatcttatcgatgacgtctcttgcattgtcgggcatgattgattttgttgccgaattgatagttttttta-gaataattact 16473385  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||| |||||    
T  16473384 agtcaaaaatatcttttcatgatgaaagtacta 16473352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 16478054 - 16477923
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| | |||||||||||| |||||||||  | ||||||||||||||||||||         |||||||||||    
T  16478054 aatattcacgattttcactatcttatcgatgacgtctcttgcattgtcgggcatgattgattttgttgccgaattgatagttttttta-gaataattact 16477956  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||| |||||    
T  16477955 agtcaaaaatatcttttcatgatgaaagtacta 16477923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35369687 - 35369557
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||||||||||||||||||||| || | ||||||||| |||| || ||||||| ||||||||||||||||||||||        ||||||||||||    
T  35369687 aatattcacgattttcactatcttattgaagacttctcttggattgtcgcgcatgagtggttttgttgccgaattgatag--ttttttggaataattact 35369590  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    || ||||||||||||||||||||||||||||||    
T  35369589 agacaaaaatatcttttcatgatgaaaatacta 35369557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 36063228 - 36063358
Alignment:
Q  17 ttcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag--nnnnnnnnggaataattactag 114  Q
    |||||||||||||| |||||||||||| |||||||||||||| || ||||||| || |||||||||||||||||||          ||||||||||||||    
T  36063228 ttcacgattttcaccatcttatcgatgacttctcttgcattgtcgagcatgagtggctttgttgccgaattgatagttttttttttggaataattactag 36063327  T
Q  115 tcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||    
T  36063328 tcaaaaatatcttttcatgatgaaaatacta 36063358  T

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Target: chr8; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35863541 - 35863408
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataattac 111  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||| || | |||||||         |||||||||||    
T  35863541 aatattcacaattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtgattttgttaccaacttgatagtttttttttggaataattac 35863442  T
Q  112 tagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||||||||||||||||||||||||||||    
T  35863441 tagtcaaaaatatcttttcatgatgaaaatacta 35863408  T

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Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 21135820 - 21135686
Alignment:
Q  13 aatattcacgattttcactatctt-atcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag-nnnnnnnnggaataatta 110  Q
    |||||||||||||||||||||||| ||| ||| ||||||||| |||| |||||||||| | ||||||| ||||||||||||           ||||||||    
T  21135820 aatattcacgattttcactatctttatcaatgacttctcttgaattgtcgggcatgagtgattttgtttccgaattgatagttttttttttaaataatta 21135721  T
Q  111 ctagtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||||||||||||||||||||||||||    
T  21135720 ctagtcaaaaatatcttttcatgatgaaaatacta 21135686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 13323522 - 13323597
Alignment:
Q  17 ttcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatag 92  Q
    |||| |||||||||||||||||||||| ||||| |||| ||| ||||||||||  |||||||||||||||||||||    
T  13323522 ttcatgattttcactatcttatcgatgacttcttttgctttgtcgggcatgagttgttttgttgccgaattgatag 13323597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 41280613 - 41280665
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggca 65  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| ||||||    
T  41280613 aatattcaagattttcactatcttatcgatgacttctcttgcattgtcgggca 41280665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 41281180 - 41281222
Alignment:
Q  101 ggaataattactagtcaaaaatatcttttcatgatgaaaatac 143  Q
    |||||||||||||||||||||||| ||||| |||| |||||||    
T  41281180 ggaataattactagtcaaaaatatattttcctgataaaaatac 41281222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 239805 - 239936
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||||||||||||||        | ||||||||||    
T  239805 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcgggcatgagtggttttgttgccgaattgatag-tttttttgaaataattact 239903  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    |||||||||||| ||||||||||||||||||||    
T  239904 agtcaaaaatattttttcatgatgaaaatacta 239936  T

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Target: scaffold0148 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 35742 - 35611
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    |||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||||||||||||||        |||||| |||||    
T  35742 aatattcatgattttcactatcttatcgatgacttctcttgcattgtcgggcatgagtggttctgttgccgaattgatag-tttttttggaatagttact 35644  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
     ||||||||||||||||||||||||||||||||    
T  35643 tgtcaaaaatatcttttcatgatgaaaatacta 35611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 9752 - 9884
Alignment:
Q  13 aatattcacgattttcactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattact 112  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| | |||| |||||||||| ||||        ||||||||||||    
T  9752 aatattcacgattttcactatcttatcgatgacttcttttgcattgtcgggcatgagtgattttcttgccgaattaatagttttttctggaataattact 9851  T
Q  113 agtcaaaaatatcttttcatgatgaaaatacta 145  Q
    ||||||||| ||||||| |||||||||||||||    
T  9852 agtcaaaaacatcttttaatgatgaaaatacta 9884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 172616 - 172712
Alignment:
Q  142 actaattacttttgtaaccgcaattggaatgatattaactcctatttatttattatctatcttacggcagatgttctatggatacaagttttttaat 238  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | ||||||    
T  172616 actaattacttttgtaatggcaattggaatgatattaactcctatttatttattatctatgttacgccagatgttctatggatacaagctatttaat 172712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 145
Target Start/End: Complemental strand, 24263 - 24146
Alignment:
Q  28 cactatcttatcgatggcttctcttgcattgccgggcatgagcggttttgttgccgaattgatagnnnnnnnnggaataattactagtcaaaaatatctt 127  Q
    |||||||||||||||| |||||||||||||| ||| |||||| | ||||||||||||||||||||        ||| |||||||||||||||||||||||    
T  24263 cactatcttatcgatgacttctcttgcattgtcggacatgagtgattttgttgccgaattgatagtcttttttggagtaattactagtcaaaaatatctt 24164  T
Q  128 ttcatgatgaaaatacta 145  Q
    ||||||||||||||||||    
T  24163 ttcatgatgaaaatacta 24146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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