View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13451_high_3 (Length: 490)
Name: NF13451_high_3
Description: NF13451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13451_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 134 - 462
Target Start/End: Complemental strand, 2794149 - 2793821
Alignment:
| Q |
134 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaatcagttataacctttccaatcgaaacaag |
233 |
Q |
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| T |
2794149 |
tctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaatcagttataagctttccaatcgaaacaag |
2794050 |
T |
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| Q |
234 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagtcgtttttcagaatggaaagaatctcatca |
333 |
Q |
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| T |
2794049 |
gtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagtcgtttttcagaatggaaagaatctcatca |
2793950 |
T |
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| Q |
334 |
gcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggct |
433 |
Q |
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| T |
2793949 |
gcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggct |
2793850 |
T |
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| Q |
434 |
cgtaaacaccgtcatcaatggcattgagt |
462 |
Q |
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| T |
2793849 |
cgtaaacaccgttatcaacggcattgagt |
2793821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 2794282 - 2794217
Alignment:
| Q |
1 |
actttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaa |
66 |
Q |
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| T |
2794282 |
actttctcaatttcttcaacaacaattccaccacctatttgcattgcatagtcacctatttcaaaa |
2794217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 450
Target Start/End: Complemental strand, 29261349 - 29261256
Alignment:
| Q |
357 |
cggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggctcgtaaacaccgtcatca |
450 |
Q |
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| T |
29261349 |
cggctgaccaccaagctgttgctgaatcacactcaacatagcttcataagctgctcttgtctccttcgtcttcggctgataaacaccgtcatca |
29261256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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