View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13451_high_7 (Length: 351)
Name: NF13451_high_7
Description: NF13451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13451_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 341
Target Start/End: Original strand, 54817572 - 54817906
Alignment:
| Q |
7 |
gaagcataggaggaacatagaatttgaccttaagtttagcctgatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccacc |
106 |
Q |
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| T |
54817572 |
gaagcattggaggaacatagaatttgaccttaagtttagcctcatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccacc |
54817671 |
T |
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| Q |
107 |
actccaagtctcattcagaacattcacagttccatcatctctcagagtgtaggtcgctcttgtgttcttaccatcacttggttgaaaccttgatggaaaa |
206 |
Q |
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| T |
54817672 |
actccaagtctcattcagaacattcacagttccatcatctctcagagtgtaggttgctcttgtgttcttaccatcacttggttgaaaccttgatggaaaa |
54817771 |
T |
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| Q |
207 |
cacgctatctcgtaccaccgacccatgtaacgcttcaaatccacacctctcgcaatatccatttctttgtttgccattgttgatgctatcgaggttagag |
306 |
Q |
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| T |
54817772 |
cacgctatctcgtaccaccgacccatgtaacgcttcaaatccacacctctcgcaacatccatttctttgtttgccattgttgatgctatcgaggttagaa |
54817871 |
T |
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| Q |
307 |
agaagaacagaacaaaagggtttcttcgtgttttg |
341 |
Q |
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| T |
54817872 |
agaagaacagaacaaaagggtttcttcgtgttttg |
54817906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 174
Target Start/End: Original strand, 54820487 - 54820646
Alignment:
| Q |
15 |
ggaggaacatagaatttgaccttaagtttagcctgatcactattaggatcagctttataagcagtaccttcaatgtaacttctttttccaccactccaag |
114 |
Q |
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||||||||||||||||||||||| || ||||| | |||||| || || ||||| ||||||||| | ||||| || | ||||||| ||| | |||||| |
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| T |
54820487 |
ggaggaacatagaatttgaccttgagcttagcttcatcacttttggggtcagccttataagcacttccttctatagaggttcttttaccattattccaag |
54820586 |
T |
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| Q |
115 |
tctcattcagaacattcacagttccatcatctctcagagtgtaggtcgctcttgtgttct |
174 |
Q |
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| T |
54820587 |
tctcattgagaacatgaacagtcccatcactgtttagagtgtatgtggctcttgtgttct |
54820646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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