View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13452_high_1 (Length: 238)

Name: NF13452_high_1
Description: NF13452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13452_high_1
NF13452_high_1
[»] chr6 (4 HSPs)
chr6 (1-238)||(22735825-22736065)
chr6 (1-68)||(7233999-7234066)
chr6 (28-90)||(16110964-16111026)
chr6 (1-71)||(4844177-4844247)
[»] chr4 (5 HSPs)
chr4 (1-71)||(47416502-47416572)
chr4 (29-71)||(49743424-49743466)
chr4 (30-68)||(41492493-41492531)
chr4 (31-71)||(21023343-21023383)
chr4 (32-68)||(24039949-24039985)
[»] chr8 (12 HSPs)
chr8 (1-90)||(216119-216208)
chr8 (1-90)||(692679-692768)
chr8 (1-90)||(696888-696977)
chr8 (1-90)||(729742-729831)
chr8 (1-90)||(853637-853726)
chr8 (1-71)||(220353-220423)
chr8 (1-71)||(689508-689578)
chr8 (1-71)||(733976-734046)
chr8 (1-71)||(857872-857942)
chr8 (1-97)||(12560065-12560161)
chr8 (23-68)||(25408690-25408735)
chr8 (27-68)||(39208863-39208904)
[»] chr3 (3 HSPs)
chr3 (32-90)||(6054197-6054255)
chr3 (18-69)||(17262270-17262321)
chr3 (28-72)||(4045624-4045668)
[»] chr1 (7 HSPs)
chr1 (23-67)||(8890082-8890126)
chr1 (29-71)||(9769571-9769613)
chr1 (29-90)||(1721202-1721263)
chr1 (29-94)||(41677122-41677187)
chr1 (27-68)||(48565141-48565182)
chr1 (31-71)||(195108-195148)
chr1 (29-69)||(1576114-1576154)
[»] chr7 (1 HSPs)
chr7 (31-90)||(26734243-26734302)
[»] chr2 (4 HSPs)
chr2 (29-70)||(28679879-28679920)
chr2 (18-71)||(36386105-36386158)
chr2 (38-90)||(2394945-2394997)
chr2 (20-68)||(16310053-16310101)
[»] scaffold0011 (1 HSPs)
scaffold0011 (21-69)||(19388-19436)
[»] chr5 (1 HSPs)
chr5 (19-71)||(22687872-22687924)


Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 22735825 - 22736065
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgaca----aaagaaata 96  Q
    ||||||||||||| |  |||||||||| |||||||||||||||||||||||| ||||||||||||||||||  |||||||||||| |    ||| |||||    
T  22735825 ttatatgcagggtctggggtttgaatcccggacacctcacttatttaccttgggaaaggtgaattctaaccagtagtctatctgaaagaaaaaaaaaata 22735924  T
Q  97 gtggacacatcttatttgttttaagggttatgctctattatttgtgttagtaggatatgagttgagttgatgttggcttgttttttatatttggttttgg 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||    
T  22735925 gtggacacatcttatttgttttaagggttatgctctattatttgtgttagtaggatatgagttgcgttgatgttggcttgttttttatatttcg-tttgg 22736023  T
Q  197 acttgggttgttgcattgtgacttgtaattgtattttatatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22736024 acttgggttgttgcattgtgacttgtaattgtattttatatt 22736065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7233999 - 7234066
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    ||||||||||||  |  |||||||| |||||||||| |||||||| ||||||| ||||||||||||||    
T  7233999 ttatatgcaggggctggggtttgaacctcggacaccccacttattcaccttgaaaaaggtgaattcta 7234066  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 16111026 - 16110964
Alignment:
Q  28 tcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||||||||||||| ||||| ||||||||||||||| | ||||  ||||| ||||||    
T  16111026 tcggacacctcacttatttatcttgaaaaaggtgaattctaatcaataggttatcttacaaaa 16110964  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 4844177 - 4844247
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||||| |   ||||| || ||| ||||||||||||||| ||||||| ||| |||||||||||||    
T  4844177 ttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattctaacc 4844247  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47416502 - 47416572
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||||| ||  |||| |||||||||||||| |||||||| || |||| |||||||||||||||||    
T  47416502 ttatatgcaggggttggggttcgaatctcggacaccccacttattcactttgaaaaaggtgaattctaacc 47416572  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 49743424 - 49743466
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  49743424 cggacacctcacttatttaccttgaaaaaggtgaattttaacc 49743466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 41492531 - 41492493
Alignment:
Q  30 ggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  41492531 ggacaccccacttatttaccttgaaaaaggtgaattcta 41492493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 21023383 - 21023343
Alignment:
Q  31 gacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  21023383 gacaccccacttattcaccttgaaaaaggtgaattctaacc 21023343  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 24039949 - 24039985
Alignment:
Q  32 acacctcacttatttaccttgagaaaggtgaattcta 68  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  24039949 acacctcacttattcaccttgaaaaaggtgaattcta 24039985  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 216208 - 216119
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||| | | | |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  216208 ttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactagactacctgacaaaa 216119  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 692768 - 692679
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||| | | | |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  692768 ttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactagactacctgacaaaa 692679  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 696977 - 696888
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||| | | | |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  696977 ttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactagactacctgacaaaa 696888  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 729831 - 729742
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||| | | | |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  729831 ttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactagactacctgacaaaa 729742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 853726 - 853637
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||| | | | |||| ||||| ||||||||||||||||| ||||||| |||||||||| ||||||  ||| ||| |||||||||    
T  853726 ttatatgcagaggtcagggttcgaatcacggacacctcacttattcaccttgaaaaaggtgaatactaaccactagactacctgacaaaa 853637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 220423 - 220353
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||| | | | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||    
T  220423 ttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaacc 220353  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 689578 - 689508
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||| | | | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||    
T  689578 ttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaacc 689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 734046 - 733976
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||| | | | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||    
T  734046 ttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaacc 733976  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 857942 - 857872
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||||| | | | |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||||    
T  857942 ttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaacc 857872  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 12560065 - 12560161
Alignment:
Q  1 ttatatgcagggtttacggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaagaaatag 97  Q
    |||||||||||| ||  |||| ||| |||  |||||||||||||||||||||| |||||| ||||||| ||  ||| |||  |||||||| ||||||    
T  12560065 ttatatgcaggggttggggttcgaacctcaaacacctcacttatttaccttgaaaaaggtcaattctagccattagactacttgacaaaaaaaatag 12560161  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 25408735 - 25408690
Alignment:
Q  23 gaatctcggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    |||||||||||||||||||  ||||||||||  |||||||||||||    
T  25408735 gaatctcggacacctcactgttttaccttgaagaaggtgaattcta 25408690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 39208904 - 39208863
Alignment:
Q  27 ctcggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    ||||||||||||||||||| ||||| | ||||||||||||||    
T  39208904 ctcggacacctcacttattcacctttaaaaaggtgaattcta 39208863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Complemental strand, 6054255 - 6054197
Alignment:
Q  32 acacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||| |||| ||||||||    
T  6054255 acacctcacttattcaccttgaaaaaggtgaattctaaccactagactatttgacaaaa 6054197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 17262270 - 17262321
Alignment:
Q  18 ggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaa 69  Q
    |||| ||||| |||||||| |||||||| ||||||| |||||||||||||||    
T  17262270 ggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaattctaa 17262321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 4045668 - 4045624
Alignment:
Q  28 tcggacacctcacttatttaccttgagaaaggtgaattctaaccg 72  Q
    ||||||||| |||||||| | ||||| ||||||||||||||||||    
T  4045668 tcggacaccccacttattcatcttgaaaaaggtgaattctaaccg 4045624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 8890126 - 8890082
Alignment:
Q  23 gaatctcggacacctcacttatttaccttgagaaaggtgaattct 67  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||    
T  8890126 gaatcccggatacctcacttatttaccttgagaaatgtgaattct 8890082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 9769613 - 9769571
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||||| |||||||| ||||||| |||||||||||||||||    
T  9769613 cggacaccccacttattcaccttgaaaaaggtgaattctaacc 9769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 1721202 - 1721263
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    ||||||||||||||||| ||||| | |||||||||||||| ||| ||| |||  ||||||||    
T  1721202 cggacacctcacttattcaccttaaaaaaggtgaattctagccgttaggctacttgacaaaa 1721263  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 41677122 - 41677187
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaagaaa 94  Q
    |||||||| |||||||| ||||||| |||||||||||||| ||  ||| ||| |||| ||||||||    
T  41677122 cggacaccccacttattcaccttgaaaaaggtgaattctagccactaggctacctgaaaaaagaaa 41677187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 48565182 - 48565141
Alignment:
Q  27 ctcggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    |||||||||| ||||||||||| |||| ||||||||||||||    
T  48565182 ctcggacaccccacttatttactttgaaaaaggtgaattcta 48565141  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 195108 - 195148
Alignment:
Q  31 gacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    |||||| |||||||| ||||||| |||||||||||||||||    
T  195108 gacaccccacttattcaccttgaaaaaggtgaattctaacc 195148  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1576154 - 1576114
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaa 69  Q
    |||||||| |||||||||||||||| ||| |||||||||||    
T  1576154 cggacaccccacttatttaccttgaaaaaagtgaattctaa 1576114  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 26734302 - 26734243
Alignment:
Q  31 gacacctcacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||| |||||||| ||||||| |||||||||||||| ||  ||| |||||||||||||    
T  26734302 gacaccccacttattcaccttgaaaaaggtgaattctagccactaggctatctgacaaaa 26734243  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 28679879 - 28679920
Alignment:
Q  29 cggacacctcacttatttaccttgagaaaggtgaattctaac 70  Q
    ||||||||||||||||||||||||  |||||| |||||||||    
T  28679879 cggacacctcacttatttaccttgcaaaaggtaaattctaac 28679920  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 36386158 - 36386105
Alignment:
Q  18 ggtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    ||||||||||||||||||| |||||||| || || | |||| ||||||||||||    
T  36386158 ggtttgaatctcggacaccccacttattcactttaaaaaagatgaattctaacc 36386105  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 2394997 - 2394945
Alignment:
Q  38 cacttatttaccttgagaaaggtgaattctaaccgatagtctatctgacaaaa 90  Q
    |||||||| ||||||| ||||||||||||||||| |||| || | ||||||||    
T  2394997 cacttattcaccttgaaaaaggtgaattctaaccaatagactttttgacaaaa 2394945  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 16310053 - 16310101
Alignment:
Q  20 tttgaatctcggacacctcacttatttaccttgagaaaggtgaattcta 68  Q
    |||||| ||| |||||  |||||||||||||||| ||||||||||||||    
T  16310053 tttgaacctctgacactccacttatttaccttgaaaaaggtgaattcta 16310101  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 19436 - 19388
Alignment:
Q  21 ttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaa 69  Q
    ||||| ||||||||||||| ||||| || |||| |||||||||||||||    
T  19436 ttgaacctcggacacctcatttattcactttgaaaaaggtgaattctaa 19388  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 22687924 - 22687872
Alignment:
Q  19 gtttgaatctcggacacctcacttatttaccttgagaaaggtgaattctaacc 71  Q
    ||||||| | || ||||| |||||||| ||||||| |||||||||||||||||    
T  22687924 gtttgaaccccgaacaccccacttattcaccttgaaaaaggtgaattctaacc 22687872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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