View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13452_high_1_N (Length: 672)
Name: NF13452_high_1_N
Description: NF13452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13452_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 24 - 548
Target Start/End: Original strand, 36411565 - 36412089
Alignment:
| Q |
24 |
atcatcatcaccagagataaaccacgcaaagctcaaccagatcaaagagtctgagtcttctgacactatccaaactccatcttcagcttctttttcaatt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411565 |
atcatcatcaccagagataaaccacgcaaagctcaaccagatcaaagagtctgagtcttctgacactatccaaactccatcttcagcttctttttcaatt |
36411664 |
T |
|
| Q |
124 |
acaccaatagcaaggcataccaacaggcacaaaagcagtgacagcttttcatggttgaattccgaaagtatgcatctttgcaccgaaggtcttggttttg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411665 |
acaccaatagcaaggcataccaacaggcacaaaagcagtgacagcttttcatggttgaattccgaaagtatgcatctttgcaccgaaggtcttggttttg |
36411764 |
T |
|
| Q |
224 |
agagttcagacgatgtcgaggactcaaagagtggagcgaatgaatctttacaaattgatcaaaatgagaaacgtgtcgaacatcatttatcttcaagaca |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411765 |
agagttcagacgatgtcgaggactcaaagagtggagcgaatgaatctttacaaattgatcaaaatgagaaacgtgtcgaacatcatttatcttcaagaca |
36411864 |
T |
|
| Q |
324 |
tcattcttatggagaatgtaggaggttaagggttagtgagtaccctcctcccatttcaagcatagggaggactgggaagccttgggtttatttcaggtct |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411865 |
tcattcttatggagaatgtaggaggttaagggttagtgagtaccctcctcccatttcaagcatagggaggactgggaagccttgggtttatttcaggtct |
36411964 |
T |
|
| Q |
424 |
attaggaataatggaagatttgtccttgaagaggtaaggataccaacacaggaggtcttgcgtgcttatagagaggatggaaggctcaagctgcagtttg |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411965 |
attaggaataatggaagatttgtccttgaagaggtaaggatacccacacaggaggtcttgcgtgcttatagagaggatggaaggctcaagctgcagtttg |
36412064 |
T |
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| Q |
524 |
ttcagcctcccgaggatgagtttct |
548 |
Q |
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||||||||||||||||||||||||| |
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| T |
36412065 |
ttcagcctcccgaggatgagtttct |
36412089 |
T |
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