View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13452_high_2 (Length: 521)
Name: NF13452_high_2
Description: NF13452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13452_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 39333187 - 39332709
Alignment:
| Q |
1 |
atatctgacacacacttcactttccaaatacactccaaccccagcatgacaaattaacaaccaccctttttcttttcatcattcaattttatttaatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39333187 |
atatctgacacacacttcactttccaaatacactccaaccccagcatgacaaattaacaaccaccctttttcttttcatcattcaattttatttaatttg |
39333088 |
T |
|
| Q |
101 |
ttccaaacacacaaacaaaacaaccttctttcttacaacgttgtcttcctttgtgtcttgtctccaaaaccatattctgagggaactgtgttgtttttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39333087 |
ttccaaacacacaaacaaaacaaccttctttcttacaacgttgtctttctttgtgtcttgtctccaaaaccatattctgagggaactgtgttgtttttca |
39332988 |
T |
|
| Q |
201 |
atggaaatggatgattttgcttcaagtagaattaatgatggttgttttcaaggtgtaaatggaaatggatatggttcatcttctttactggttttggata |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
39332987 |
atggaaatggatgattttgcttcaagtagaattaatgatggttgttttcaaggtgtaaatggaaatggatatggttcatcttcttcactggttttagata |
39332888 |
T |
|
| Q |
301 |
gagaaaaaggagagcatgtggaggcagctgtgaaattggaaagaaagggtgtgtcacctgagagaagtattgaagctttgaagaatcatagcgaagcaga |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39332887 |
gagaaaaaggagagcttgtggaggcagctgtgaaattggaaagaaagggtgtatcacctgagagaagtattgaagctttgaagaatcatagtgaagcaga |
39332788 |
T |
|
| Q |
401 |
aagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgttattccaggggctaataaggttagttca |
479 |
Q |
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| T |
39332787 |
aagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgttattccaggggctaataaggttagttca |
39332709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 223 - 389
Target Start/End: Complemental strand, 30203737 - 30203571
Alignment:
| Q |
223 |
caagtagaattaatgatggttgttttcaaggtgtaaatggaaatggatatggttcatcttctttactggttttggatagagaaaaaggagagcatgtgga |
322 |
Q |
| |
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|||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
30203737 |
caagtagaataattgatagttgttttcaaggtgtaaatggaaatggatatggttcatcttcttcgctggttttggatagagaaaaaggagagtttgtgga |
30203638 |
T |
|
| Q |
323 |
ggcagctgtgaaattggaaagaaagggtgtgtcacctgagagaagtattgaagctttgaagaatcat |
389 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30203637 |
ggcaactgtgaaattagaaagaaagggtgtgtcacctgagagaagtattgaagctttgaagaatcat |
30203571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 223 - 451
Target Start/End: Complemental strand, 12102709 - 12102484
Alignment:
| Q |
223 |
caagtagaattaatgatggttgttttcaaggtgtaaatggaaatggatatggttcatcttctttactggttttggatagagaaaaaggagagcatgtgga |
322 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
12102709 |
caagtagaattaatgatggttgttttcaaggtgtaaatggaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgtgga |
12102610 |
T |
|
| Q |
323 |
ggcagctgtgaaattggaaagaaagggtgtgtcacctgagagaagtattgaagctttgaagaatcatagcgaagcagaaagaaggagaagagcaagaatt |
422 |
Q |
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||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
12102609 |
ggcagctgtgaaattagaaagaaagggtgtgtcacctgggagaagtatcgaagctttgaagaatcatagtgaagcaga---gaggagaagagcaagaatt |
12102513 |
T |
|
| Q |
423 |
aattcacatcttgatacacttcgtagtgt |
451 |
Q |
| |
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|||| |||||||||||||||||||||||| |
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| T |
12102512 |
aatttacatcttgatacacttcgtagtgt |
12102484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 4e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 223 - 400
Target Start/End: Complemental strand, 17146643 - 17146468
Alignment:
| Q |
223 |
caagtagaattaatgatggttgttttcaaggtgtaaatggaaatggatatggttcatcttctttactggttttggatagagaaaaaggagagcatgtgga |
322 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
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| T |
17146643 |
caagtagaattaatgatgattgttttcaaggtgtaaatgaaagtggatatggttcatcttcttcactggttttggatagagaaaaaggagagcttgcgga |
17146544 |
T |
|
| Q |
323 |
ggcagctgtgaaattggaaagaaagggtgtgtcacctgagagaagtattgaagctttgaagaatcatagcgaagcaga |
400 |
Q |
| |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
17146543 |
ggcagctgtgaaattagaaagaaagg--gtgtcacctgagagaagtattgaagctttgaagaatcatagtgaagcaga |
17146468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 288 - 479
Target Start/End: Complemental strand, 30877738 - 30877544
Alignment:
| Q |
288 |
ctggttttggatagagaaaaaggagagcatgtggaggcagctgtgaaattggaaagaaagggtgtgtcacct---gagagaagtattgaagctttgaaga |
384 |
Q |
| |
|
|||||||||||||| || | ||| |||| ||| |||| | |||| ||| ||||| ||||||||||||| || ||||||||| ||||||||||||||| |
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| T |
30877738 |
ctggttttggatagggagagaggggagcttgtagaggaacctgttaaaatggaaggaaagggtgtgtccactacagagagaagtgttgaagctttgaaga |
30877639 |
T |
|
| Q |
385 |
atcatagcgaagcagaaagaaggagaagagcaagaattaattcacatcttgatacacttcgtagtgttattccaggggctaataaggttagttca |
479 |
Q |
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||||||| || |||||||| ||||||||||| || |||||| ||||||||||||| |||||| |||| |||||||| ||| |||||||||||| |
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| T |
30877638 |
atcatagtgaggcagaaaggaggagaagagctaggattaatgcacatcttgatactcttcgttgtgtcattccaggtgctttgaaggttagttca |
30877544 |
T |
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