View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13452_high_3 (Length: 490)
Name: NF13452_high_3
Description: NF13452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13452_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 415
Target Start/End: Complemental strand, 48374834 - 48374421
Alignment:
| Q |
2 |
gtaatgggagccttcatattattaatttgtgttgctgcatatcaaaagaaagnnnnnnnnnngaagttgatgagttgctagacaaatatcataatatcta |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||||||||||| |
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| T |
48374834 |
gtaatgggagccttcatattattaatttgtgttgctgcatatcgaaaaaagaaaaaaaaatagaagttgatgagttgctatacaaatatcataatatcta |
48374735 |
T |
|
| Q |
102 |
ggattacatttcctagtgacatttatttgagtgaatcatcaatttaataagtgaaattgtagtggttagacaaaagcctgaccagatgtcatgatggctg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374734 |
ggattacatttcctagtgacatttatttgagtgaatcatcaatttaataagtgaaattgtagtggttagacaaaagcctgaccagatgtcatgatggctg |
48374635 |
T |
|
| Q |
202 |
atctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatggaagttccggtttcaagttt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374634 |
atctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatggaagttccggtttcaagttt |
48374535 |
T |
|
| Q |
302 |
atatggcaagggcttttttccctttggaacattttcatcgtcatttccaatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa |
401 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48374534 |
atacggcaagggcttttttccctttggaacattttcatcgtcatttccaatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa |
48374435 |
T |
|
| Q |
402 |
gaaagaattgttgg |
415 |
Q |
| |
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| T |
48374434 |
gaaagtattgttgg |
48374421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 189 - 415
Target Start/End: Original strand, 53431114 - 53431341
Alignment:
| Q |
189 |
gtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatggaagttc |
288 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| | |
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| T |
53431114 |
gtcatgatggctgatctaattgcggaggcactccaagtagggtttctagatttgatgcttcctgcaaggcctgaaacatgtggacatgccatggaagtcc |
53431213 |
T |
|
| Q |
289 |
cggtttcaagtttatatggcaagggcttttttccctttggaacattttcatcgtcatttccaatccatgctgcaagaatggtaacacctggtgctgcaat |
388 |
Q |
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| | ||||| |||||||| | || |||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||| || |
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| T |
53431214 |
ctgattcaatgttatatggtgatggtttttttccttttggaacattttctgtgtcatttccagtccatgctgcaagaatgttaacacctggtgctgcgat |
53431313 |
T |
|
| Q |
389 |
atcaggct-acaaagaaagaattgttgg |
415 |
Q |
| |
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||| |||| ||||| ||||||||||||| |
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| T |
53431314 |
atcgggctaacaaaaaaagaattgttgg |
53431341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 183 - 413
Target Start/End: Original strand, 53423453 - 53423684
Alignment:
| Q |
183 |
ccagatgtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatgg |
282 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| | |
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| T |
53423453 |
ccagaggtcatgatggccgatctgattgcagaggcactccaagtagggtttctagatttaatgctgcctgcaaggcctgaaacatgtgggcatgacatag |
53423552 |
T |
|
| Q |
283 |
aagttccggtttcaagtttatatggcaagggcttttttccctttggaacattttcatcgtcatttccaatccatgctgcaagaatggtaacacctggtgc |
382 |
Q |
| |
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|||| || | || || |||||||| | |||||||| || |||||||||| | | ||| ||||| ||||||||||||||| |||||||||||| |
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| T |
53423553 |
aagtccctgatttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgc |
53423652 |
T |
|
| Q |
383 |
tgcaatatcaggctac-aaagaaagaattgtt |
413 |
Q |
| |
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||||||||| |||||| ||||||||||||||| |
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| T |
53423653 |
tgcaatatcgggctacaaaagaaagaattgtt |
53423684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 26095613 - 26095735
Alignment:
| Q |
172 |
caaaagcctgaccagatgtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgg |
271 |
Q |
| |
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||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26095613 |
caaaatccttaccggaggtcatgatggctgatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcctgaaacatgtgg |
26095712 |
T |
|
| Q |
272 |
gcatgacatggaagttccggttt |
294 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
26095713 |
gcatgacatggaagttccagttt |
26095735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 201 - 414
Target Start/End: Original strand, 53308221 - 53308435
Alignment:
| Q |
201 |
gatctgattgcagaggcactccaagtagggttcctagatttgatgctacctgcaaggcccgaaacatgtgggcatgacatggaagttccggtttcaagtt |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || |||| || || ||||||| ||| |||||||| ||||||||||| ||||| || | || || | |
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| T |
53308221 |
gatctgattgcagaggcactccaaatagggtttttaaatttaattctgcctgcaacgcctgaaacatgagggcatgacatagaagtccccgatttaaagt |
53308320 |
T |
|
| Q |
301 |
tatatggcaagggcttttttccctttggaacattttcatcgtcatttccaatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctac-a |
399 |
Q |
| |
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||||||| |||||||||| || |||||||||| | ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||| | |
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| T |
53308321 |
tatatggtgagggctttttcccttttggaacatcagttacatcattaccaatccatgatgcaagaatggcaacacctggtgctgcaatatcaggctacaa |
53308420 |
T |
|
| Q |
400 |
aagaaagaattgttg |
414 |
Q |
| |
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||||||||||||||| |
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| T |
53308421 |
aagaaagaattgttg |
53308435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 26095761 - 26095820
Alignment:
| Q |
356 |
tgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaagaaagaattgttgg |
415 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |||| |
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|
| T |
26095761 |
tgctgcaacaatgttaacacctggtgctgcaatatcaggctacaaagagagaatttttgg |
26095820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 413 - 449
Target Start/End: Complemental strand, 48374405 - 48374369
Alignment:
| Q |
413 |
tggattgatgatagttatgtgtaaccctatctatatt |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
48374405 |
tggattgatgatagttatgtgtaaccctatctatatt |
48374369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 53423093 - 53423149
Alignment:
| Q |
118 |
tgacatttatttgagtgaatcatcaatttaataagtgaaattgtagtggttagacaa |
174 |
Q |
| |
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||||||| |||||||||| | ||||||||||| |||||||||| ||||||||||| |
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|
| T |
53423093 |
tgacattgatttgagtgagttatcaatttaatttgtgaaattgttttggttagacaa |
53423149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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