View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13452_high_9 (Length: 321)

Name: NF13452_high_9
Description: NF13452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13452_high_9
NF13452_high_9
[»] chr6 (1 HSPs)
chr6 (8-301)||(28645649-28645943)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 28645649 - 28645943
Alignment:
Q  8 tccaattccatttcaccccatacaacccattaatccaaaagtacaactaatagagatgctccgaacaagtccataaagtctagctcaactgacaatgata 107  Q
    |||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  28645649 tccaattccatttcaccccatagaacccatcaatccaaaaatacaactaatagagatactccgaacaagtccataaagtctagctcaactgacgatgata 28645748  T
Q  108 ttgttaggttagacaccttcactcataatcgaatccatgacctctcaattgtgtgtgagttttacatggtgtaccatttcatccaaaaaccaaataaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28645749 ttgttaggttagacaccttcactcataatcgaatccatgacctctcaattgtgtgtgagttttacatggtgtaccatttcatccaaaaaccaaataaaaa 28645848  T
Q  208 gtatacactctaaacaaaatttcccattg-tttttatcatgaagtagaattgttgatatttatcaaaaccacccaacaattggaacaagacccat 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28645849 gtatacactctaaacaaaatttcccattgttttttatcatgaagtagaattgttgatatttatcaaaaccacccaacaattggaacaagacccat 28645943  T

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