View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13453_high_2 (Length: 634)
Name: NF13453_high_2
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 268 - 617
Target Start/End: Original strand, 12616034 - 12616383
Alignment:
| Q |
268 |
taacttgcacatacctgaagtttgatgaatcattaggaatagaaggagcattggcattgagaagaagatattccacctcacccatgtctccattgaaccc |
367 |
Q |
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| T |
12616034 |
taacttgcacatacctgaagtttgatgaatcattaggaatagaaggagcattggcattgagaagaagatattccacctcacccatgtctccattgaaccc |
12616133 |
T |
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| Q |
368 |
aatattcttgcatccataaccatagggattaccaggtgcaactagtttcttttgttccattggttttgcaaagaaatcaaaacctacttcttccattttg |
467 |
Q |
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| T |
12616134 |
aatattcttgcatccataaccaaagggattaccaagtgcaactagtttcttttgttccattggttttgcaaagaaatcaaaacctacttcttccattttg |
12616233 |
T |
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| Q |
468 |
gatatgatgtcataagggacaccatggttaatcacattgaagaaaccatattcttcacaagcttttactatgagttttattaccattgatttttcagctg |
567 |
Q |
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| T |
12616234 |
gatatgatgtcatgagggacaccatggttaatcacattgaagaaaccatattcttcacaagcttttactatgagttttattaccattgatttttcagctg |
12616333 |
T |
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| Q |
568 |
ataggtctatcattggtaggtcaataggtataatcctttcccctaagatc |
617 |
Q |
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| T |
12616334 |
ataggtctatcattggtaggtcaataggtataatcctttcccctaagatc |
12616383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 12615777 - 12616000
Alignment:
| Q |
16 |
ataggggggaccaaataaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatcatat |
115 |
Q |
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| T |
12615777 |
ataggggggaccaaatgaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatcatat |
12615876 |
T |
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| Q |
116 |
ttgttcaagacatgttgtcaccctgatt---nnnnnnncaagcagtttataccgtcattgttcatgata--gtatagtaaaccaagcatgcaataaatgc |
210 |
Q |
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| T |
12615877 |
ttcttcaagacatgttgtcaccctgattaaaaaaaaaccaagcagtttataccgtcattgttcatgatagtgtatactaaaccaagcatgcaataaatgc |
12615976 |
T |
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| Q |
211 |
aaaagatttggccaatgatatatt |
234 |
Q |
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| T |
12615977 |
aaaagatttggccaatgatatatt |
12616000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 489 - 541
Target Start/End: Original strand, 29878072 - 29878124
Alignment:
| Q |
489 |
ccatggttaatcacattgaagaaaccatattcttcacaagcttttactatgag |
541 |
Q |
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| T |
29878072 |
ccatggtttatgactttgaagaatccaaaatcttcacaagcttttactatgag |
29878124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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