View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13453_high_3 (Length: 465)
Name: NF13453_high_3
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 446
Target Start/End: Complemental strand, 5466434 - 5465989
Alignment:
| Q |
1 |
atggcaagtaattttttggtttgtataagttatatatctttgtttctgtttcttcgttttatgctgctgctatttgctaatcatatatatctcctttaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5466434 |
atggcaagtaattttttggtttgtataagttatatatctttgtttctgtttcttcgttttatgctgctgctatttgctaatcatatatatctccttcaaa |
5466335 |
T |
|
| Q |
101 |
atacaatatacataaatgatactgtataaataataatgatcaagattcaagatacatgatagtttagnnnnnnnngtcgcaatgatataattttcaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5466334 |
atacaatatacataaatgatactgtataaataataatgatcaagattcaagatacatgatagtttag--aaaaaagtcgcaatgatataattttcaaaac |
5466237 |
T |
|
| Q |
201 |
acagttcattgtctaaattaaatatttgaagttgacagacttagaatcaaggcagtgttgtaaaataaatcaaatcatagactgcgcac-nnnnnnnngt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| | |
|
|
| T |
5466236 |
acagttcattgtctaaattaaatatttgaagttgacagacttagagtcaaggcagtgttgtaaaataaatcaaatcataaattgcgcacaaaaaaaaagg |
5466137 |
T |
|
| Q |
300 |
ttgacaaaaagcttctatg-nnnnnnnngcgttaacctttagtttataccgaaaagagcccttagtaatccgaagtttgatcgagaaataagtaaagtct |
398 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5466136 |
ttgacaaaaaggttctatgtttttttttgcgttaacctttagtttataccgaaaggagcccttagtaatccgatgtttgatcgagaaataagtaaagtct |
5466037 |
T |
|
| Q |
399 |
atctaaaaattgnnnnnnnctttatgattataattgatcctttggtgt |
446 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
5466036 |
atctaaaaattatttttttctttatgattataattggtcctttggtgt |
5465989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University