View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13453_high_4 (Length: 413)
Name: NF13453_high_4
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 42726474 - 42726096
Alignment:
| Q |
1 |
cgagttctaaaagagttaaatagaaaaataagatattgcacatataaccattcaaatcaccaatttatatgagtttattgcagaatgaagattgattaat |
100 |
Q |
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| T |
42726474 |
cgagttctaaaagagttaaatagaaaaataagatattgcacatataaccattcaaatcaccaatttatatgagtttattgcagaatgaagattgattaat |
42726375 |
T |
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| Q |
101 |
acaaaaagtaaaaatttaaggaagagttctgaattgatcgaatgaatatctaaatggtgtgagaaacattgaaaagcgacagcatatttatagcaaaatt |
200 |
Q |
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| T |
42726374 |
acaaaaagtaaaaatttaaggaagagttctgaattgatcgaatgaatatctaaatggtgtgagaaacattg-aaagcgacagcatatttatagcaaaatt |
42726276 |
T |
|
| Q |
201 |
acattttgattcatatatttgtgtagacccaaaatttgatgtaattataattagaggcaaaaaacgtaattatcgattatcaatttttgtagagttacaa |
300 |
Q |
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| T |
42726275 |
acattttgattcataaatttgtgtagacccaaaatttgatgtaattataattagaggcaaaaaacgtaattatcgattatcaatttttttagag------ |
42726182 |
T |
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| Q |
301 |
acaaaaaattacaaacaaatattgctttgaaatggaatctcgataatttgaaatgcgatataacattagagaaagatcttgaaaataaaaagac |
394 |
Q |
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| T |
42726181 |
--------ttacaaacaaatattgctttgaaatggaatctcgataatttaaaatgcgatataacattagagaaagatcttgaaaataaaaagac |
42726096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 393
Target Start/End: Original strand, 52341826 - 52341860
Alignment:
| Q |
359 |
tataacattagagaaagatcttgaaaataaaaaga |
393 |
Q |
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| T |
52341826 |
tataacattagagaaagatctggaaaataaaaaga |
52341860 |
T |
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