View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13453_low_10 (Length: 253)
Name: NF13453_low_10
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_low_10 |
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| [»] chr5 (12 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 9367383 - 9367142
Alignment:
| Q |
12 |
tcatcatattgattggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctg |
111 |
Q |
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| T |
9367383 |
tcatcatattgattggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgtcggtgatggtgtagagcatgtggtgcctg |
9367284 |
T |
|
| Q |
112 |
catgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgcaatgatattaaaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9367283 |
catgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttaatctgcaatgatattaaaat |
9367184 |
T |
|
| Q |
212 |
gagtttgaggtgcacgatgaatatagctggcatgttctccga |
253 |
Q |
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| T |
9367183 |
gagtttgaggtgcacgatgaatatagctggcatgtcctccga |
9367142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 9352237 - 9352476
Alignment:
| Q |
15 |
tcatattgattggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcat |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
9352237 |
tcatattgattggttgataattattaaattcatatgataatgaaattaataaaataaacagcacttgttagtgatggtgtagagcatgtggtgcctgcat |
9352336 |
T |
|
| Q |
115 |
gattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca--------atgatatt |
206 |
Q |
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|||| ||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||||||| |
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| T |
9352337 |
gatt-tcctttaaatatggtaagcttgttacatgttttcccaacattgtgaatatgtgaatgatactgcatgtgatattctgcaagatgcttatgatatt |
9352435 |
T |
|
| Q |
207 |
aaaatgagtttgaggtgcacgatgaatatagctggcatgtt |
247 |
Q |
| |
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||||||||||||||| || ||||||||||||||||||||| |
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| T |
9352436 |
gaaatgagtttgaggttcatgatgaatatagctggcatgtt |
9352476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 9302089 - 9302326
Alignment:
| Q |
12 |
tcatcatattgattggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctg |
111 |
Q |
| |
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|||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
9302089 |
tcatcatattgattggttgataattgttaaattgatataataatgaaattaataaaatatgcagcacttgttagtgatggtgtagagcatgtggtgcctg |
9302188 |
T |
|
| Q |
112 |
catgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca--------atgat |
203 |
Q |
| |
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|| |||| |||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| ||||||| ||||||||| ||||| |
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| T |
9302189 |
caggatttccctttaaatatggtaagcttgtttgatgt-----caacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgat |
9302283 |
T |
|
| Q |
204 |
attaaaatgagtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
9302284 |
attgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
9302326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 246
Target Start/End: Original strand, 9332512 - 9332751
Alignment:
| Q |
15 |
tcatattgattggttgagaattattaaattcatatgata-atgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgca |
113 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| ||| | || || |||||||||| || |||||||| ||||||| |||||||||||||||||| | |
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| T |
9332512 |
tcatattgattggttgataattatttaattcatataatataataagttgataaaatatgcagtacttgttgatgatggtttagagcatgtggtgcctgta |
9332611 |
T |
|
| Q |
114 |
tgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca-------atgatatt |
206 |
Q |
| |
|
||||| || ||||||||| |||| ||||||||||||||||||| |||||||||||| |||||| ||| ||||||| |||| |||| |||||||| |
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| T |
9332612 |
tgatttccttttgaatatagtaaccttgttagatgttttcccagcattgtgaatatgtgaatggtatcgcatgtggtattatgcaagatgctatgatatt |
9332711 |
T |
|
| Q |
207 |
aaaatgagtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||||||||| |
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| T |
9332712 |
aaaatgaatttgagatgcatgatgaatatagctggcatgt |
9332751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 9305706 - 9305951
Alignment:
| Q |
12 |
tcatcatattgattggttgagaattattaaattcatatgataatga-aattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcct |
110 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||| |
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|
| T |
9305706 |
tcatcatattgattggtggataattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcct |
9305805 |
T |
|
| Q |
111 |
gcatg-attcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca--------atg |
201 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||| |||| |||| ||| |
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| T |
9305806 |
acatgaatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattttgcaagatgcttatg |
9305905 |
T |
|
| Q |
202 |
atattaaaatgagtttgaggtgcacgatgaatatagctggcatgtt |
247 |
Q |
| |
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||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
9305906 |
atattgaaatgagtttgaggttcatgatgaatatagctggcatgtt |
9305951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 9288729 - 9288961
Alignment:
| Q |
23 |
attggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcatga-ttccc |
121 |
Q |
| |
|
||||||||| |||||||| ||||||| |||| |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||| | || || |
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| T |
9288729 |
attggttgataattattatgttcatataataacaaaattaataaaatagacagcagttgttaaggatggtgtagagcatgtggtgcctacataaattgcc |
9288828 |
T |
|
| Q |
122 |
ctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca--atg------atattaaaatga |
213 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||| |||| | | ||||||| ||||||||||||||||| ||| ||||| |||||| |
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|
| T |
9288829 |
atttgaatatggtaagcttgttacatgttagtccaacattgagaatttattaatgatactgcatgtgttattctgcaagatgctatgaatattgaaatga |
9288928 |
T |
|
| Q |
214 |
gtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
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|
| T |
9288929 |
gtttgagatgcatgatgaatatagctggcatgt |
9288961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 246
Target Start/End: Original strand, 9297890 - 9298089
Alignment:
| Q |
56 |
gaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcat-gattcccctttgaatatggtaagcttgttagatgttttcc |
154 |
Q |
| |
|
||||| ||||||||||| |||| ||||| |||||||| |||||||||||| | || |||| ||||||||||||||||||||||||| ||||| | |
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|
| T |
9297890 |
gaaatgaataaaatatgcagcagttgttaaggatggtgttgagcatgtggtgtcaatatggatttccctttgaatatggtaagcttgttacatgttagtc |
9297989 |
T |
|
| Q |
155 |
caacattgtgaatatttgaatgatatagcatgtgttattctgca--------atgatattaaaatgagtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| ||||| |
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|
| T |
9297990 |
caacattgtgaatatattaatgatactgcatgtgttattctgcaagatgcttatgatattaaaatgagtttgagatgcatgatgaatatagctgccatgt |
9298089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 23 - 246
Target Start/End: Complemental strand, 9373299 - 9373067
Alignment:
| Q |
23 |
attggttgagaattattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcatga-ttccc |
121 |
Q |
| |
|
||||||||| |||||| || ||||||| || ||||| ||||||||| ||| ||||| |||||| |||||||||||||||||| ||||| || | |
|
|
| T |
9373299 |
attggttgataattatcaagttcatatagaaaggaaatgaataaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttc |
9373200 |
T |
|
| Q |
122 |
ctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgca--atg------atattaaaatga |
213 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||||||||||||| ||| |||||||||||| |
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|
| T |
9373199 |
ctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgttattctgcaagatgccatgaatattaaaatga |
9373100 |
T |
|
| Q |
214 |
gtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| |
|
|
| T |
9373099 |
gtttgagatgcatgatgaatatagctggcatgt |
9373067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 246
Target Start/End: Original strand, 9293283 - 9293482
Alignment:
| Q |
56 |
gaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcatga-ttcccctttgaatatggtaagcttgttagatgttttcc |
154 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||| || || |||||||||||||||||||||| ||||| | |
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|
| T |
9293283 |
gaaattaataaaatagacagcagttgttaatgatggtgtagagcatgtggtgcctacatgaattgccatttgaatatggtaagcttgttacatgttagtc |
9293382 |
T |
|
| Q |
155 |
caacattgtgaatatttgaatgatatagcatgtgttattctgc--aatg------atattaaaatgagtttgaggtgcacgatgaatatagctggcatgt |
246 |
Q |
| |
|
||||||||||||| | | ||||| | |||||||||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
9293383 |
caacattgtgaatttattaatgagactgcatgtgttattctgctagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
9293482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 9309737 - 9309571
Alignment:
| Q |
34 |
attattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcat-gattcccctttgaatatg |
132 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||| | |||||||| | ||||| ||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
9309737 |
attattaatttcatataataagtaaattaataaaatagttatcacttgttaatcatggtttagagcatgtggtgcctgcatggatttccctttgaatatg |
9309638 |
T |
|
| Q |
133 |
gtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgcaa |
199 |
Q |
| |
|
|||||||||| | | | | ||||||||||||||||| | |||||||| ||||||| || ||||||| |
|
|
| T |
9309637 |
gtaagcttgtcatacctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaa |
9309571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 9356143 - 9355977
Alignment:
| Q |
34 |
attattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcatga-ttcccctttgaatatg |
132 |
Q |
| |
|
|||||||| ||||||| |||| |||||| |||||||| | | |||||||| | ||||| ||||||||||| || |||||||| || || |||||||||| |
|
|
| T |
9356143 |
attattaatttcatataataaggaaattgataaaataggtatcacttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatg |
9356044 |
T |
|
| Q |
133 |
gtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgcaa |
199 |
Q |
| |
|
||||| |||| | || | | ||||||||||||||||| | |||||||| ||||||| || ||||||| |
|
|
| T |
9356043 |
gtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaa |
9355977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 199
Target Start/End: Complemental strand, 9348773 - 9348607
Alignment:
| Q |
34 |
attattaaattcatatgataatgaaattaataaaatatgaagcacttgttggtgatggtgtagagcatgtggtgcctgcatga-ttcccctttgaatatg |
132 |
Q |
| |
|
|||||||| |||||| |||| |||||| |||||||| | | |||||||| | ||||| ||||||||||| || |||||||| || || |||||||||| |
|
|
| T |
9348773 |
attattaatctcatataataaggaaattgataaaataggtatcacttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatg |
9348674 |
T |
|
| Q |
133 |
gtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttattctgcaa |
199 |
Q |
| |
|
||||| |||| | || | | ||||||||||||||||| | |||||||| ||||||| || ||||||| |
|
|
| T |
9348673 |
gtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaa |
9348607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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