View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13453_low_11 (Length: 245)
Name: NF13453_low_11
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 50710460 - 50710228
Alignment:
| Q |
1 |
tccaagttaaataccataatttaatctataataggttattatgtataattggtttgctccaaatttatataaatggcataaataaaaggtaaaattattt |
100 |
Q |
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| T |
50710460 |
tccaagttaaataccataatttaatctataataggttattatgtataattggtttgctccaaatttatataaatggcataaataaaaggtaaaattattt |
50710361 |
T |
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| Q |
101 |
gtctagtacgcaatcaagtttttattgctaatcgcattgtcatctaaatggaaagataaagataatatcgcagacaggcatgaatataggtaaagcatca |
200 |
Q |
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| T |
50710360 |
gtctagtacgcaatcaagtttttattgctaatcgcattgtcatctaaatggaaagataaagataatatcgcagacaggcacgaatataggtaaagcatca |
50710261 |
T |
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| Q |
201 |
aacctggatacagaaagcaagacccaatatatt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50710260 |
aacctggatacagaaagcaagacccaatatatt |
50710228 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 839703 - 839743
Alignment:
| Q |
193 |
aagcatcaaacctggatacagaaagcaagacccaatatatt |
233 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||| |
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| T |
839703 |
aagcatcaaacctgaatacagaaagcaagacccagtatatt |
839743 |
T |
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