View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13453_low_2 (Length: 977)
Name: NF13453_low_2
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13453_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 867; Significance: 0; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 867; E-Value: 0
Query Start/End: Original strand, 18 - 966
Target Start/End: Complemental strand, 27046319 - 27045359
Alignment:
| Q |
18 |
aattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046319 |
aattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattacc |
27046220 |
T |
|
| Q |
118 |
ctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtctt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046219 |
ctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtctt |
27046120 |
T |
|
| Q |
218 |
caatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagactagttggtgcttcaacaagtaccaaacaa |
317 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27046119 |
caaagcaattattgaacttgtaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagactagttggggcttcaacaagtaccaaacaa |
27046020 |
T |
|
| Q |
318 |
ccacttc------------aaccaaaagaacctattgcattttcacctttagttcaaccagaaacagttattaaaatctattgttttaaggttgagaatg |
405 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27046019 |
ccacttccaccattacttcaaccaaaagaacctattgcattttcacctttagttcaaccaaaaacagttattaaaatctattgttttaaggttgagaatg |
27045920 |
T |
|
| Q |
406 |
aggtgatnnnnnnncttaagatgagtttgatgaaggaaggtgatagtgaaagtgaaccagttacaacttatgagtcacttggtgcttatgtgtggaggtc |
505 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045919 |
aggtgataaaaagacttaagatgagtttgatgaaggaaggtggtagtgaaagtgaaccagttacaacttatgagtcacttggtgcttatgtgtggaggtc |
27045820 |
T |
|
| Q |
506 |
aagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgcctata |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045819 |
aagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgcctata |
27045720 |
T |
|
| Q |
606 |
gggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagagg |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045719 |
gggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagagg |
27045620 |
T |
|
| Q |
706 |
ctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcatggacggtagcggtgc |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045619 |
ctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggtgc |
27045520 |
T |
|
| Q |
806 |
ggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaattttgtaccagcaccatgc |
905 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045519 |
ggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccatgc |
27045420 |
T |
|
| Q |
906 |
aacatgtttgcgtctttagaagggtgcattttcgcatctcctggtaaacttgatgatgatg |
966 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045419 |
aacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatg |
27045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 27086378 - 27086113
Alignment:
| Q |
18 |
aattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||| |
|
|
| T |
27086378 |
aattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttgatattccttctcctaaggataaaagttacc |
27086279 |
T |
|
| Q |
118 |
ctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtctt |
217 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||| || |||| | ||||||| |||| ||| || ||| |||| |
|
|
| T |
27086278 |
ctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatctt |
27086179 |
T |
|
| Q |
218 |
caatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
283 |
Q |
| |
|
|| |||||| |||||||||||| |||||||| |||||| || |||| |||||||||||||||||| |
|
|
| T |
27086178 |
cagagcaattgttgaacttgcaagaggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
27086113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 18 - 283
Target Start/End: Complemental strand, 27041900 - 27041635
Alignment:
| Q |
18 |
aattgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| | ||||||| ||||| |
|
|
| T |
27041900 |
aattgcaccctttcttctcttcattacttggacaatactgacacagaaattgcaaaagacttggtgcttgatattccttctcctaaggataaaagttacc |
27041801 |
T |
|
| Q |
118 |
ctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtctt |
217 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||| |||||||||||||||||||||| || |||| | ||||||| |||| ||| || ||| |||| |
|
|
| T |
27041800 |
ctttggtgttaatggtgacaaaatttctttgtggcggtttcacaattggaatggggttgtcgcatgctatttgtgacggatttggcgcatcacaaatctt |
27041701 |
T |
|
| Q |
218 |
caatgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
283 |
Q |
| |
|
|| |||||| ||||||||| || ||||||| |||||| || |||| |||||||||||||||||| |
|
|
| T |
27041700 |
cagagcaattgttgaacttggaagtggaagaactgagccatcagtgaaacctgtgtgggaaagaga |
27041635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 27063246 - 27062984
Alignment:
| Q |
21 |
tgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctt |
120 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||| | |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27063246 |
tgcacactttcttctcttcattacctggacaatactaacacagaaattgcaaaacatttggtgcttgatcttccttctcctcaagataaaaattaccctt |
27063147 |
T |
|
| Q |
121 |
tggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttcaa |
220 |
Q |
| |
|
|||| || |||||||| |||||| ||||||||||||||||||||||||||||| ||||||| | ||||||| |||| ||| || ||| ||||||| |
|
|
| T |
27063146 |
tggtgttaatggtgacgaaatttctttgtggtggtttcacaattggaatggggatgtcacatgctatttgtgacggatttggcgcatcacaattcttcaa |
27063047 |
T |
|
| Q |
221 |
tgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
283 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||| || |||| |||||||||||||||||| |
|
|
| T |
27063046 |
agcaattcttgaacttgcaagaggaagaaccgagccatcagtgaaacctgtgtgggaaagaga |
27062984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 21 - 283
Target Start/End: Complemental strand, 27070319 - 27070057
Alignment:
| Q |
21 |
tgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctt |
120 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||| |||| || ||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
27070319 |
tgcacactttcttcccttcattacctggacaatactaacactgaaattgcaaaacatttggtgcttgattttcctactcctcaggataaaaattaccctt |
27070220 |
T |
|
| Q |
121 |
tggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttcaa |
220 |
Q |
| |
|
|||| || ||||||||||||||| | ||||||||||||||||||||||||||| ||||||| | ||||||| |||| |||| || ||| ||||||| |
|
|
| T |
27070219 |
tggtgttaatggtgacaaaatttctctgtggtggtttcacaattggaatggggatgtcacatgctatttgtgacggatttggtgcatcacaattcttcaa |
27070120 |
T |
|
| Q |
221 |
tgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagaga |
283 |
Q |
| |
|
||| || |||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
27070119 |
agcagttgttgaacttgcaagaggaagaactgagccatctgtgaaacctgtgtgggaaagaga |
27070057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 491 - 736
Target Start/End: Complemental strand, 27069843 - 27069598
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||| ||||||||||||||||||| ||||| | | ||| | || | |
|
|
| T |
27069843 |
ttatgtgtggaggtcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagttggtatgagacgtaacttgatggatttt |
27069744 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
||| |||| || | ||||||||| || ||| |||| |||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27069743 |
gatactttaccgaaagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctcgatgaaatgccactctatgaaattgtta |
27069644 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgt |
736 |
Q |
| |
|
|| |||| |||||| ||||||| ||| ||| | ||||||||||||| |
|
|
| T |
27069643 |
agctgattaaagagactaaaaatatttctttcaccactgattatgt |
27069598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 491 - 745
Target Start/End: Complemental strand, 27062776 - 27062522
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| | ||| ||||||||||||| ||||| | | ||| | |||| |
|
|
| T |
27062776 |
ttatgtgtggaggtcaagagcaagagccttaaaacttagcagcaatgacaaaacaatgctaaatgtgttagttggtatcagacgaaacttgatggattat |
27062677 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
|| |||| |||| |||||||||||| ||| |||| | |||| ||||||||| |||||||| ||||| ||| ||||||||||||||||| |||| |||| |
|
|
| T |
27062676 |
gaaactttacctaaagggtattatggcaattctaccatagatgcaaaagttgttttaaaagtgagtgaactcgatgaaatgccactctataaaatcgtta |
27062577 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
745 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27062576 |
agctgattaaagagactaaaaatattgctttcactgctgattatgtaagaaactc |
27062522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 491 - 745
Target Start/End: Complemental strand, 27056734 - 27056480
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || |||||| ||||| || ||| || ||||||||||||||||| | || | | |||| |
|
|
| T |
27056734 |
ttatgtgtagaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattgcagttggtattagacgcaacttggaggattat |
27056635 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
||| |||| |||| |||||| ||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27056634 |
gatactttacctaaagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaattgtta |
27056535 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
745 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | |||||||||||| |||||| |
|
|
| T |
27056534 |
agctgattaaagagactaaaaatattgctttcattgctgattatgtcacaaactc |
27056480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 491 - 919
Target Start/End: Complemental strand, 27098565 - 27098143
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
|||||| ||||| |||||||||||||||||| |||||| || |||||| ||||| | ||| || ||| ||||||||||||| | |||| | || | |
|
|
| T |
27098565 |
ttatgtttggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgtagcaggtattagacgcaacttgaaggatttt |
27098466 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
|||||||| |||| || |||||||| ||| | ||| |||| ||| |||||||||||||||||||||| |||||| |||||||||||||||| ||| |
|
|
| T |
27098465 |
gatcctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcgatgaaaggccactctatgaaattatta |
27098366 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcat |
790 |
Q |
| |
|
|| | |||| |||| ||||||| ||||||||| ||||||||| ||||||||| || ||| |||| | |||| | |||| | || | || || |
|
|
| T |
27098365 |
agctcatcagagagactaaaaacattgcttccaccactgattttgtcaaaaattcaatc---aacacgttggagactaattataacgaggaatcaaggat |
27098269 |
T |
|
| Q |
791 |
ggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaatttt |
890 |
Q |
| |
|
|| ||| ||||| |||||| ||||||| |||||||| |||||||||||| |||||| ||| | |||||||||| ||| | ||| |||||||||| |
|
|
| T |
27098268 |
ggtaagtactggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaa---tgtagattttggtgggaacgaagcagtgaattta |
27098172 |
T |
|
| Q |
891 |
gtaccagcaccatgcaacatgtttgcgtc |
919 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27098171 |
gtaccagcaccatgcaacatgtttgcgtc |
27098143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 491 - 919
Target Start/End: Complemental strand, 27105564 - 27105142
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||| ||||||||| ||||| |||||| || ||| |||||||||||||| |||| | || | |
|
|
| T |
27105564 |
ttatgtgtggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtagctggtattagacgcaagttgaaggatttt |
27105465 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
|| ||||| |||| || |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||||||||||| ||| |
|
|
| T |
27105464 |
gaacctttacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattatta |
27105365 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccgaagacggagcataagcaagattttagcat |
790 |
Q |
| |
|
| | || | |||| ||||||| ||||||||| ||||||||| | ||||||| || ||| | ||| | ||||| | |||| | || | || || |
|
|
| T |
27105364 |
acctaataagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaa---cacgttggagacgaattataaagaggaatccaggat |
27105268 |
T |
|
| Q |
791 |
ggacggtagcggtgcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaatagtatagattttggagggtatgaatcagtgaatttt |
890 |
Q |
| |
|
| ||| |||||| |||||| ||||||| |||||||| |||||||||||| |||||| |||| |||||||||| ||| ||||| |||||||||| |
|
|
| T |
27105267 |
gctaagtaccggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatg---tagattttggtgggcatgaagcagtgaattta |
27105171 |
T |
|
| Q |
891 |
gtaccagcaccatgcaacatgtttgcgtc |
919 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
27105170 |
gtaccagcaccatgcaacttgtttgcgtc |
27105142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 27099032 - 27098773
Alignment:
| Q |
21 |
tgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctt |
120 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | ||||||||||| ||| |||| ||| |||||||| |
|
|
| T |
27099032 |
tgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacatttggtgcttga---------tcccgaagagaaagcttaccctt |
27098942 |
T |
|
| Q |
121 |
tggtattcatggtgacaaaatttatttgtggtggtttcacaattggaat-ggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttca |
219 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||| |||||||| || ||||| |||||||| || | | | ||||| ||| |||| || |||| |||||| |
|
|
| T |
27098941 |
tggtgttcaaggtgacaaaatttctttgtggaggtttcacgatcggaatgggggtgtt-gcacgctatctgtgacggagttggtgcatctcaattcttca |
27098843 |
T |
|
| Q |
220 |
atgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagact |
289 |
Q |
| |
|
| || || ||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27098842 |
aagcgatcattgaacttgcaaggggaagaaatgagccctcgaagatacctgtgtgggaaagagagagact |
27098773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 21 - 289
Target Start/End: Complemental strand, 27106031 - 27105772
Alignment:
| Q |
21 |
tgcaccctttcttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctt |
120 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||| ||||||||| | |||||||| || ||| |||| |||| |||||||| |
|
|
| T |
27106031 |
tgcaccctttcttctattaattacttggacaataccgacacagaaattgcaaaacaactggtgcttaat---------cctgaagacaaaacttaccctt |
27105941 |
T |
|
| Q |
121 |
tggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttca-catgttgtttgtgatggatatggttcaattcaagtcttca |
219 |
Q |
| |
|
|||| |||| ||||||||||||| |||||| ||||||||||| ||||||||| || | || | | | ||||| ||| |||| || |||| | |||| |
|
|
| T |
27105940 |
tggtgttcaaggtgacaaaatttcgttgtggaggtttcacaatcggaatgggg-gtgctgcacgctatctgtgacggagttggtgcatctcaattattca |
27105842 |
T |
|
| Q |
220 |
atgcaattattgaacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagagagact |
289 |
Q |
| |
|
| || |||||||||||||||| |||||||| |||||| || ||||||||||||||||||||||||||| |
|
|
| T |
27105841 |
aagcgattattgaacttgcaagaggaagaaatgagccctcgacgatacctgtgtgggaaagagagagact |
27105772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 491 - 745
Target Start/End: Complemental strand, 27085899 - 27085645
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttat |
590 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| | |||||| |||| | | | || |||||||| |||||||| | | || | |||| |
|
|
| T |
27085899 |
ttatgtgtggaggtcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattgcagttggtagtagacgcaacttaaaggattat |
27085800 |
T |
|
| Q |
591 |
gatcctttgcctatagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgtta |
690 |
Q |
| |
|
||| |||| |||| |||||||||||| ||| ||| | | |||| ||| ||||| |||||||| |||| |||||| ||||||||||||||||||| ||| |
|
|
| T |
27085799 |
gatactttacctaaagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgtgctcaacgaaatgccactctatgaaaccatta |
27085700 |
T |
|
| Q |
691 |
agttgatcaaagaggctaaaaagattgcttcctccactgattatgtcaaaaactc |
745 |
Q |
| |
|
|| |||| |||||| ||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27085699 |
agctgattaaagagactaaaaatattgctttcactgctgattatgttacaaactc |
27085645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 605 - 745
Target Start/End: Complemental strand, 27041348 - 27041208
Alignment:
| Q |
605 |
agggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaagag |
704 |
Q |
| |
|
|||||||||||| ||| ||||| | |||| ||| ||||| |||||||| ||||||||||| ||||||||||||||||||| ||||| |||| |||||| |
|
|
| T |
27041348 |
agggtattatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaaccattaagctgattaaagag |
27041249 |
T |
|
| Q |
705 |
gctaaaaagattgcttcctccactgattatgtcaaaaactc |
745 |
Q |
| |
|
||||||| ||||||| | | |||||||||| | |||||| |
|
|
| T |
27041248 |
actaaaaatattgctttcactgctgattatgttacaaactc |
27041208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 491 - 552
Target Start/End: Complemental strand, 27041421 - 27041360
Alignment:
| Q |
491 |
ttatgtgtggaggtcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttga |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || |||||| ||||| |||||| |
|
|
| T |
27041421 |
ttatgtgtggaggtcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttga |
27041360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 859 - 916
Target Start/End: Complemental strand, 27062411 - 27062354
Alignment:
| Q |
859 |
tagattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgtttgc |
916 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| |||| ||||||||||| ||| |||| |
|
|
| T |
27062411 |
tagattttggaggttatgaattagtgaattttctacctgcaccatgcaagatgcttgc |
27062354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 32 - 285
Target Start/End: Complemental strand, 19415038 - 19414785
Alignment:
| Q |
32 |
ttctcttcattacttggacaatactgacacagatattgcaaaagacttggtgcttgatgttccttctcctcaagataaaaattaccctttggtattcatg |
131 |
Q |
| |
|
||||||| |||||||||||||| | |||||||| | |||||| | |||||| ||||| |||||| ||||||||||| |||||| ||||| | ||| |
|
|
| T |
19415038 |
ttctcttaattacttggacaatgcagacacagaagtggcaaaacaattggtgtttgatcctccttcccctcaagataagtgttacccattggtggtaatg |
19414939 |
T |
|
| Q |
132 |
gtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggttcaattcaagtcttcaatgcaattattg |
231 |
Q |
| |
|
|| ||| |||||||||||||||| | || ||||||||||||| ||||||| ||||||||||||| |||| || |||| | |||||||||||| ||| |
|
|
| T |
19414938 |
gtaacacaatttatttgtggtggcataaccattggaatggggttgtcacatgccgtttgtgatggatttggtgcatctcaatttttcaatgcaattgttg |
19414839 |
T |
|
| Q |
232 |
aacttgcaaaaggaagaagtgagccttctgtgatacctgtgtgggaaagagaga |
285 |
Q |
| |
|
|| ||||||||||||||| ||||||| | || | |||| | ||||||||||||| |
|
|
| T |
19414838 |
aaattgcaaaaggaagaaatgagcctacggttaaacctatatgggaaagagaga |
19414785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 861 - 914
Target Start/End: Complemental strand, 19414212 - 19414159
Alignment:
| Q |
861 |
gattttggagggtatgaatcagtgaattttgtaccagcaccatgcaacatgttt |
914 |
Q |
| |
|
||||||||||| | |||| |||| ||||||||| ||||||||||||||||||| |
|
|
| T |
19414212 |
gattttggaggatttgaagcagttaattttgtaatagcaccatgcaacatgttt |
19414159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 117 - 203
Target Start/End: Complemental strand, 20065076 - 20064990
Alignment:
| Q |
117 |
cctttggtattcatggtgacaaaatttatttgtggtggtttcacaattggaatggggtgttcacatgttgtttgtgatggatatggt |
203 |
Q |
| |
|
|||||||| |||| ||||||||| ||| |||||||||||||||||||||||||||| | |||||| |||||||||||| |||||| |
|
|
| T |
20065076 |
cctttggttttcaaggtgacaaagtttctttgtggtggtttcacaattggaatgggattgtcacatagtgtttgtgatggttatggt |
20064990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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