View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13453_low_6 (Length: 358)

Name: NF13453_low_6
Description: NF13453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13453_low_6
NF13453_low_6
[»] chr4 (14 HSPs)
chr4 (17-350)||(47059666-47059999)
chr4 (17-350)||(47081803-47082136)
chr4 (272-341)||(23870032-23870101)
chr4 (273-329)||(25779718-25779774)
chr4 (272-334)||(36071632-36071694)
chr4 (297-340)||(7540513-7540556)
chr4 (294-340)||(25790449-25790495)
chr4 (272-333)||(29118464-29118525)
chr4 (296-332)||(38087653-38087689)
chr4 (272-320)||(43515932-43515980)
chr4 (272-331)||(7853290-7853349)
chr4 (272-326)||(3643220-3643273)
chr4 (272-334)||(55147901-55147963)
chr4 (291-340)||(5627482-5627531)
[»] chr8 (10 HSPs)
chr8 (272-340)||(13580433-13580501)
chr8 (272-340)||(26835669-26835737)
chr8 (272-340)||(28376643-28376711)
chr8 (272-340)||(22930307-22930375)
chr8 (272-334)||(34142016-34142078)
chr8 (281-341)||(4350755-4350815)
chr8 (282-338)||(13236151-13236208)
chr8 (272-339)||(31383461-31383528)
chr8 (271-316)||(32036759-32036804)
chr8 (282-334)||(39612702-39612754)
[»] chr6 (8 HSPs)
chr6 (275-340)||(10668956-10669021)
chr6 (272-340)||(12174306-12174374)
chr6 (272-329)||(9815747-9815804)
chr6 (271-329)||(6274004-6274063)
chr6 (272-332)||(34969390-34969450)
chr6 (299-334)||(33344788-33344823)
chr6 (299-334)||(35122053-35122088)
chr6 (282-332)||(4337976-4338026)
[»] chr2 (9 HSPs)
chr2 (271-340)||(40876999-40877068)
chr2 (272-334)||(5163784-5163846)
chr2 (282-340)||(4206647-4206705)
chr2 (275-325)||(38035395-38035445)
chr2 (271-331)||(18197333-18197392)
chr2 (282-340)||(17271348-17271406)
chr2 (271-340)||(36506946-36507015)
chr2 (271-340)||(15925463-15925534)
chr2 (282-334)||(34909424-34909476)
[»] chr7 (11 HSPs)
chr7 (273-349)||(9429412-9429487)
chr7 (271-339)||(21292804-21292872)
chr7 (272-340)||(35812600-35812668)
chr7 (282-340)||(30095845-30095903)
chr7 (272-324)||(3940726-3940778)
chr7 (291-339)||(15134545-15134593)
chr7 (291-326)||(26914437-26914472)
chr7 (275-326)||(31329665-31329716)
chr7 (276-334)||(33480569-33480627)
chr7 (274-332)||(40351845-40351903)
chr7 (299-332)||(37996503-37996536)
[»] chr1 (10 HSPs)
chr1 (272-340)||(1240413-1240481)
chr1 (272-331)||(8246795-8246854)
chr1 (271-328)||(3265539-3265596)
chr1 (291-340)||(23897989-23898038)
chr1 (271-339)||(1153798-1153866)
chr1 (272-332)||(33735825-33735885)
chr1 (280-326)||(35204298-35204344)
chr1 (306-340)||(35405309-35405343)
chr1 (272-325)||(29664192-29664245)
chr1 (271-336)||(45385310-45385375)
[»] chr5 (9 HSPs)
chr5 (271-350)||(502782-502859)
chr5 (274-334)||(7887264-7887324)
chr5 (271-347)||(16569374-16569450)
chr5 (272-340)||(16570571-16570639)
chr5 (274-340)||(12263725-12263791)
chr5 (282-334)||(10325717-10325769)
chr5 (272-340)||(32257760-32257828)
chr5 (272-332)||(3193597-3193657)
chr5 (282-334)||(39542402-39542454)
[»] chr3 (9 HSPs)
chr3 (271-331)||(2758070-2758130)
chr3 (272-340)||(33510172-33510240)
chr3 (282-332)||(11383585-11383635)
chr3 (291-340)||(8266689-8266738)
chr3 (272-325)||(15670919-15670972)
chr3 (280-341)||(27541151-27541212)
chr3 (282-326)||(18257971-18258015)
chr3 (272-332)||(19149925-19149985)
chr3 (275-323)||(42417929-42417977)
[»] scaffold0531 (1 HSPs)
scaffold0531 (272-328)||(9699-9755)
[»] scaffold0128 (1 HSPs)
scaffold0128 (271-324)||(18557-18610)


Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 47059999 - 47059666
Alignment:
Q  17 agtattttcacctttaggagcgaggaaagaccccaatggaatgataatgggttgagttttttcagttgtattgtgtgtggcttctattaatgtaaatagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059999 agtattttcacctttaggagcgaggaaagaccccaatggaatgataatgggttgagttttttcagttgtattgtgtgtggcttctattaatgtaaatagc 47059900  T
Q  117 atgaagaagatggagaacagtattgataacaaagcaagggtggaagccatagtaggattgggaaactaatgtaagcgtcccaaaagaaaattatgattct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47059899 atgaagaagatggagaacagtattgataacaaagcaagggtggaagccatagtaggattgggaaactaacgtaagcgtcccaaaagaaaattatgattct 47059800  T
Q  217 aatttcttaatgatcaattcactcttgtattttttgtcccaaaagattgatcaggttaaaaagaaatatatttgtataatactaactaataagtaaaaat 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47059799 tatttcttaatgatcaattcactcttgtattttttgtcccaaaagattgatcaggttaaaaagaaatatatttgtataatactaactaataagtaaaaat 47059700  T
Q  317 aataattttggtgccccttaaaaagatgatgtcc 350  Q
    |||||||||||||||||||||||| |||||||||    
T  47059699 aataattttggtgccccttaaaaaaatgatgtcc 47059666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 47081803 - 47082136
Alignment:
Q  17 agtattttcacctttaggagcgaggaaagaccccaatggaatgataatgggttgagttttttcagttgtattgtgtgtggcttctattaatgtaaatagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47081803 agtattttcacctttaggagcgaggaaagaccccaatggaatgataatgggttgagttttttcagttgtattgtgtgtggcttctattaatgtaaatagc 47081902  T
Q  117 atgaagaagatggagaacagtattgataacaaagcaagggtggaagccatagtaggattgggaaactaatgtaagcgtcccaaaagaaaattatgattct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47081903 atgaagaagatggagaacagtattgataacaaagcaagggtggaagccatagtaggattgggaaactaacgtaagcgtcccaaaagaaaattatgattct 47082002  T
Q  217 aatttcttaatgatcaattcactcttgtattttttgtcccaaaagattgatcaggttaaaaagaaatatatttgtataatactaactaataagtaaaaat 316  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47082003 tatttcttaatgatcaattcactcttgtattttttgtcccaaaagattgatcaggttaaaaagaaatatatttgtataatactaactaataagtaaaaat 47082102  T
Q  317 aataattttggtgccccttaaaaagatgatgtcc 350  Q
    |||||||||||||||||||||||| |||||||||    
T  47082103 aataattttggtgccccttaaaaaaatgatgtcc 47082136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 272 - 341
Target Start/End: Complemental strand, 23870101 - 23870032
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaag 341  Q
    ||||||| | |||||| | |||| ||||||||| ||||||||||||||||||||||||||||| ||||||    
T  23870101 ttaaaaaaatatatatctatatagtactaactactaagtaaaaataataattttggtgcccctaaaaaag 23870032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Original strand, 25779718 - 25779774
Alignment:
Q  273 taaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtg 329  Q
    ||||||||||||||| || ||  ||||||||||||||||||||||||||||||||||    
T  25779718 taaaaagaaatatatgtgcatcgtactaactaataagtaaaaataataattttggtg 25779774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 36071632 - 36071694
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||||||||||||| | |||| |||||||||  ||||||||||||||||||| ||||||||    
T  36071632 ttaaaaagaaatatatctatatagtactaactatcaagtaaaaataataattttagtgcccct 36071694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 7540513 - 7540556
Alignment:
Q  297 actaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  7540513 actaactaataagtaaaaataataattttgatgcccctaaaaaa 7540556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 25790495 - 25790449
Alignment:
Q  294 aatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  25790495 aatactaactattaaataaaaataataattttggtgcccctaaaaaa 25790449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 333
Target Start/End: Complemental strand, 29118525 - 29118464
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccc 333  Q
    |||||||||||||||| | | || ||||||||| ||  ||||||||||||||||||||||||    
T  29118525 ttaaaaagaaatatatctatgtagtactaactactacataaaaataataattttggtgcccc 29118464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 38087689 - 38087653
Alignment:
Q  296 tactaactaataagtaaaaataataattttggtgccc 332  Q
    ||||||||| |||||||||||||||||||||||||||    
T  38087689 tactaactattaagtaaaaataataattttggtgccc 38087653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 320
Target Start/End: Original strand, 43515932 - 43515980
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataata 320  Q
    ||||||||| |||||| | ||||||||||||||||||||||||| ||||    
T  43515932 ttaaaaagatatatatctatataatactaactaataagtaaaaaaaata 43515980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 7853349 - 7853290
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcc 331  Q
    |||||| || |||||| | |||| ||||||||| |||||||||||||||| |||||||||    
T  7853349 ttaaaaggatatatatctatatagtactaactactaagtaaaaataataaatttggtgcc 7853290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 3643220 - 3643273
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttg 326  Q
    |||||||||||||||| | |||| ||||||||| ||||| |||||||||||||||    
T  3643220 ttaaaaagaaatatatctatatagtactaactactaagt-aaaataataattttg 3643273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 55147901 - 55147963
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||||||||||||| | | |  || | |||| |||||||||||||||||||||||||||||    
T  55147901 ttaaaaagaaatatatctatgttgtagtgactattaagtaaaaataataattttggtgcccct 55147963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Complemental strand, 5627531 - 5627482
Alignment:
Q  291 tataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||| |||||||||  | |||||||||||||||||||||||||| |||||    
T  5627531 tatattactaactaccatgtaaaaataataattttggtgcccctaaaaaa 5627482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 13580433 - 13580501
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  13580433 ttaaaaagaaatatatttatataatactaactattaagtaaaaataataattttggtgcccctaaaaaa 13580501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 26835669 - 26835737
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||||| |||  ||||||||| ||||||||||||||||||||||||||||| |||||    
T  26835669 ttaaaaagaaatatatttatattgtactaactattaagtaaaaataataattttggtgcccctaaaaaa 26835737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 28376711 - 28376643
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||| || |||||    
T  28376711 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgccgctaaaaaa 28376643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 22930375 - 22930307
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||||| |||||| | |||| ||||||||| ||||||||||| ||||||||||||||||| |||||    
T  22930375 ttaaaaagatatatatctatatagtactaactattaagtaaaaattataattttggtgcccctgaaaaa 22930307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 34142078 - 34142016
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||||||||||||| | |||| ||||||||| ||| ||||||||||| |||||||||||||    
T  34142078 ttaaaaagaaatatatctatatagtactaactactaaataaaaataatagttttggtgcccct 34142016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 4350755 - 4350815
Alignment:
Q  281 aatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaag 341  Q
    ||||||| | |||||||||||||| ||| |||||||||||||||||||||| || ||||||    
T  4350755 aatatatctatataatactaactactaaataaaaataataattttggtgcctctaaaaaag 4350815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 13236208 - 13236151
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaa-taataattttggtgccccttaaa 338  Q
    |||||| | |||| ||||||||| |||||||||| |||||||||||||||||||||||    
T  13236208 atatatatatatagtactaactactaagtaaaaaataataattttggtgccccttaaa 13236151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 31383528 - 31383461
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaa 339  Q
    ||||||| || |||| || ||||||| |||||| |||| |||||||||||||||| ||||| ||||||    
T  31383528 ttaaaaataattatacttatataatattaactattaagaaaaaataataattttgatgccctttaaaa 31383461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 32036804 - 32036759
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaat 316  Q
    |||||||||||||||||||||| || ||| |||| |||||||||||    
T  32036804 gttaaaaagaaatatatttgtaaaacactcactactaagtaaaaat 32036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 39612702 - 39612754
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||| | |||||||||||||| |||||||||||||| |||||  |||||||    
T  39612702 atatatatatataatactaactagtaagtaaaaataatcattttcatgcccct 39612754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 340
Target Start/End: Original strand, 10668956 - 10669021
Alignment:
Q  275 aaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10668956 aaaagatatatatctatataatactaactaataagtaaaaataataattttggtgcccctaaaaaa 10669021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 12174374 - 12174306
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||| | |||| ||||||||| |||||||||||||||||||||||||| ||||||||    
T  12174374 ttaaaaagaaatatatctatatagtactaactactaagtaaaaataataattttggtgcctcttaaaaa 12174306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 9815747 - 9815804
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtg 329  Q
    |||||||||||||||| | |||| || |||||| ||||||||||||||||||||||||    
T  9815747 ttaaaaagaaatatatctatatagtattaactactaagtaaaaataataattttggtg 9815804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 6274004 - 6274063
Alignment:
Q  271 gttaaaaagaaa-tatatttgtataatactaactaataagtaaaaataataattttggtg 329  Q
    |||||||||||| ||||| | |||||||||||||| ||||| ||||||||||||||||||    
T  6274004 gttaaaaagaaaatatatgtatataatactaactactaagttaaaataataattttggtg 6274063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Complemental strand, 34969450 - 34969390
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    ||||||| |||||||| | |||| ||| ||||| ||||||||||||||||||||| |||||    
T  34969450 ttaaaaataaatatatctatatagtaccaactactaagtaaaaataataattttgatgccc 34969390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 33344823 - 33344788
Alignment:
Q  299 taactaataagtaaaaataataattttggtgcccct 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  33344823 taactactaagtaaaaataataattttggtgcccct 33344788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 35122053 - 35122088
Alignment:
Q  299 taactaataagtaaaaataataattttggtgcccct 334  Q
    |||||| |||||||||||||||||||||||||||||    
T  35122053 taactactaagtaaaaataataattttggtgcccct 35122088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 4337976 - 4338026
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    |||||| | |||| ||||||||| ||||||||| |||||||||||||||||    
T  4337976 atatatatatatagtactaactactaagtaaaagtaataattttggtgccc 4338026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 40876999 - 40877068
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||| |||| |||||    
T  40876999 gttaaaaagaaatatatttatataatactaactaccaagtaaaaataataattttggtgtccctaaaaaa 40877068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 334
Target Start/End: Complemental strand, 5163846 - 5163784
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||| |||||||    
T  5163846 ttaaaaagatatatatttatatagtactaactactaagtaaaaataataattttgatgcccct 5163784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 4206647 - 4206705
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||| | |||| ||||||||| |||||||| |||||||||||||||||||| |||||    
T  4206647 atatatatatatattactaactactaagtaaatataataattttggtgcccctaaaaaa 4206705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 325
Target Start/End: Original strand, 38035395 - 38035445
Alignment:
Q  275 aaaagaaatatatttgtataatactaactaataagtaaaaataataatttt 325  Q
    ||||||||||||||  | |||||||||||||| ||||||||||||||||||    
T  38035395 aaaagaaatatattaatttaatactaactaatgagtaaaaataataatttt 38035445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 18197392 - 18197333
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcc 331  Q
    ||||||||||||||||| |  |||||||||||||  |||||||||||||||||||| ||||    
T  18197392 gttaaaaagaaatatatgta-ataatactaactatcaagtaaaaataataattttgatgcc 18197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 17271348 - 17271406
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||| | ||| ||||| |||| ||||||||||||||||||||||| ||||| |||||    
T  17271348 atatatctatattatactgactactaagtaaaaataataattttggtacccctaaaaaa 17271406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 36506946 - 36507015
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||| |||||| | | |||||||||||||| ||| |||||||||| |||||  ||| |||||||||    
T  36506946 gttaaaaacaaatatttctatataatactaactactaattaaaaataatgatttttctgctccttaaaaa 36507015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 15925534 - 15925463
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaac--taataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||||||||||||| | || |||||| ||  ||  |||||||||||||||||||| | |||||||||||    
T  15925534 gttaaaaagaaatatatctatacaatacttacaatacaaagtaaaaataataattttgataccccttaaaaa 15925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 34909424 - 34909476
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||| | |||| ||||||||| ||||||||||||||||||||  |||||||    
T  34909424 atatatatatatattactaactagtaagtaaaaataataattttaatgcccct 34909476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 273 - 349
Target Start/End: Original strand, 9429412 - 9429487
Alignment:
Q  273 taaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaagatgatgtc 349  Q
    ||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||||||||| |||||| ||||||||    
T  9429412 taaaaagaaatatatttatataatactaactattaaataaaaatactaattttggtgcccc-taaaaaaatgatgtc 9429487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 21292804 - 21292872
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaa 339  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||| ||||    
T  21292804 gttaaaaagaaatatatttatatgatattaactactaagtaaaaataataattttggtgcccctaaaaa 21292872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 35812668 - 35812600
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||| | |||| |||||| || ||||||||||||||||||||| ||||||| |||||    
T  35812668 ttaaaaagaaatatatctatatagtactaattattaagtaaaaataataattttgatgcccctaaaaaa 35812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 340
Target Start/End: Original strand, 30095845 - 30095903
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||| | |||| || |||||| ||||||||||||||||||||||||||||| |||||    
T  30095845 atatatatatatattaataactactaagtaaaaataataattttggtgcccctaaaaaa 30095903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 3940726 - 3940778
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 324  Q
    |||||||||||||||| | ||| ||||| |||| |||||||||||||||||||    
T  3940726 ttaaaaagaaatatatctatattatacttactactaagtaaaaataataattt 3940778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 15134545 - 15134593
Alignment:
Q  291 tataatactaactaataagtaaaaataataattttggtgccccttaaaa 339  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||| ||||    
T  15134545 tatagtactagctactaagtaaaaataataattttggtgcccctaaaaa 15134593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 26914437 - 26914472
Alignment:
Q  291 tataatactaactaataagtaaaaataataattttg 326  Q
    |||||||||||||| |||||||||||||||||||||    
T  26914437 tataatactaactactaagtaaaaataataattttg 26914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 326
Target Start/End: Original strand, 31329665 - 31329716
Alignment:
Q  275 aaaagaaatatatttgtataatactaactaataagtaaaaataataattttg 326  Q
    ||||||||||||| | ||||||||||| ||  ||||||||||||||||||||    
T  31329665 aaaagaaatatatgtatataatactaattacgaagtaaaaataataattttg 31329716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 33480569 - 33480627
Alignment:
Q  276 aaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||||||||| | | || ||||||||| ||  |||||||||||||||||||||||||    
T  33480569 aaagaaatatatctatgtagtactaactattacataaaaataataattttggtgcccct 33480627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Original strand, 40351845 - 40351903
Alignment:
Q  274 aaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    ||||| || ||||| | |||||||||||||| | |||||||||||||| ||||||||||    
T  40351845 aaaaataattatatctatataatactaactactgagtaaaaataataactttggtgccc 40351903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 37996536 - 37996503
Alignment:
Q  299 taactaataagtaaaaataataattttggtgccc 332  Q
    |||||| |||||||||||||||||||||||||||    
T  37996536 taactactaagtaaaaataataattttggtgccc 37996503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 272 - 340
Target Start/End: Complemental strand, 1240481 - 1240413
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |||||||| |||||    
T  1240481 ttaaaaagaaatatatttatatagtactaactactaagtaaaaataataattttagtgcccctaaaaaa 1240413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 272 - 331
Target Start/End: Original strand, 8246795 - 8246854
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcc 331  Q
    |||||||||||||||| | |||| ||||||||| ||||||||||||||||||||||||||    
T  8246795 ttaaaaagaaatatatctatatagtactaactattaagtaaaaataataattttggtgcc 8246854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 3265539 - 3265596
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggt 328  Q
    ||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||    
T  3265539 gttaaaaagaaatatatctatttaatactaactattaagtaaaaataataattttggt 3265596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 23897989 - 23898038
Alignment:
Q  291 tataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||| ||||||||| ||||||||||| ||||||||||||||||| |||||    
T  23897989 tatattactaactactaagtaaaaatgataattttggtgcccctaaaaaa 23898038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 1153798 - 1153866
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaa 339  Q
    |||||||| |||||||  | | |||||||||||| ||| |||||||||||||| ||||||||| |||||    
T  1153798 gttaaaaacaaatataactatttaatactaactactaaataaaaataataattgtggtgccccctaaaa 1153866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 33735825 - 33735885
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    |||||||||||||||||| || ||||||||||| ||  ||||| |||||||||| ||||||    
T  33735825 ttaaaaagaaatatatttatacaatactaactactagataaaattaataattttagtgccc 33735885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 35204298 - 35204344
Alignment:
Q  280 aaatatatttgtataatactaactaataagtaaaaataataattttg 326  Q
    |||||| ||| ||||||||||| || |||||||||||||||||||||    
T  35204298 aaatatttttatataatactaattactaagtaaaaataataattttg 35204344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 340
Target Start/End: Complemental strand, 35405343 - 35405309
Alignment:
Q  306 taagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||||||||||||||||||||||||| |||||    
T  35405343 taagtaaaaataataattttggtgcccctaaaaaa 35405309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 29664245 - 29664192
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataatttt 325  Q
    |||||||||||||||  | |||| |||||| || ||||||||||||||||||||    
T  29664245 ttaaaaagaaatatacctatatagtactaattactaagtaaaaataataatttt 29664192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 336
Target Start/End: Original strand, 45385310 - 45385375
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccctta 336  Q
    |||||||||||||||||   | |||||| ||||| ||| ||||||||||||||||| | |||||||    
T  45385310 gttaaaaagaaatatatccatttaatacaaactactaaataaaaataataattttgatacccctta 45385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 271 - 350
Target Start/End: Complemental strand, 502859 - 502782
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaagatgatgtcc 350  Q
    ||||||||||||||||| | |||||||||||||  ||||||||||||||||||||| ||| ||||||||| |||||||||    
T  502859 gttaaaaagaaatatatctatataatactaactc-taagtaaaaataataattttgatgcaccttaaaaa-atgatgtcc 502782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 274 - 334
Target Start/End: Original strand, 7887264 - 7887324
Alignment:
Q  274 aaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    ||||||||| |||| | |||| ||||||||| |||||||||||||||||||||||||||||    
T  7887264 aaaaagaaacatatctatatagtactaactactaagtaaaaataataattttggtgcccct 7887324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 347
Target Start/End: Original strand, 16569374 - 16569450
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaagatgatg 347  Q
    ||||||||||||||||  | ||||||| || ||| |||||||||||||||||||||   ||||||||||| ||||||    
T  16569374 gttaaaaagaaatatacctatataatattacctactaagtaaaaataataattttgacaccccttaaaaaaatgatg 16569450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 16570571 - 16570639
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||| | |||  ||| ||||||||||||||||||||||||||| |||| || |||||    
T  16570571 ttaaaaagaaatatatctatatggtaccaactaataagtaaaaataataattttgatgcctctaaaaaa 16570639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 12263725 - 12263791
Alignment:
Q  274 aaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||| ||| |||| | |||| ||||||| | ||||||||||||||||||||||||||||| |||||    
T  12263725 aaaaaaaaaaatatctatatagtactaaccattaagtaaaaataataattttggtgcccctaaaaaa 12263791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 10325717 - 10325769
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||| | |||| ||||||| | |||||||||||||||||||||||||||||    
T  10325717 atatatatatatagtactaacaactaagtaaaaataataattttggtgcccct 10325769  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 32257760 - 32257828
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    ||||||| |||||||| | | |||||||||||| |||||||||||||| |||||| ||| ||| |||||    
T  32257760 ttaaaaaaaaatatatctatgtaatactaactactaagtaaaaataattattttgatgctcctaaaaaa 32257828  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 3193597 - 3193657
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    |||||||||||||||| | | || ||||| ||| ||  |||||||||||||||||||||||    
T  3193597 ttaaaaagaaatatatctatgtagtactacctactacataaaaataataattttggtgccc 3193657  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 39542454 - 39542402
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgcccct 334  Q
    |||||||  |||| ||||||||| || |||||||||||||||||| |||||||    
T  39542454 atatattcatatagtactaactactacgtaaaaataataattttgatgcccct 39542402  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 2758130 - 2758070
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgcc 331  Q
    ||||||||||||||| ||| |||| ||||||||| ||| ||||||||||||||||||||||    
T  2758130 gttaaaaagaaatatgtttatatagtactaactactaattaaaaataataattttggtgcc 2758070  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 340
Target Start/End: Original strand, 33510172 - 33510240
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||||| | | ||  |||||||| ||||||||||||||||||||| || || |||||||    
T  33510172 ttaaaaagaaatatatctatgtagcactaactactaagtaaaaataataattttgatgtccattaaaaa 33510240  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 11383635 - 11383585
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    |||||| | |||| ||||||||| ||| |||||||||||||||||||||||    
T  11383635 atatatatatatattactaactactaaataaaaataataattttggtgccc 11383585  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 340
Target Start/End: Original strand, 8266689 - 8266738
Alignment:
Q  291 tataatactaactaataagtaaaaataataattttggtgccccttaaaaa 340  Q
    |||||||||||||| || |||||||| ||||||||||||||  |||||||    
T  8266689 tataatactaactattacgtaaaaatcataattttggtgccttttaaaaa 8266738  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Complemental strand, 15670972 - 15670919
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataatttt 325  Q
    |||||||||||||||| | |||  || |||||| ||||||||||||||||||||    
T  15670972 ttaaaaagaaatatatctatattgtaataactactaagtaaaaataataatttt 15670919  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Original strand, 27541151 - 27541212
Alignment:
Q  280 aaatatatttgtataatactaactaataagtaaaaataataattttggtgccccttaaaaag 341  Q
    |||||||| | |||| |||||| || ||| ||||||||||||||||| ||||||| ||||||    
T  27541151 aaatatatctatatattactaattactaaataaaaataataattttgatgcccctaaaaaag 27541212  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 18257971 - 18258015
Alignment:
Q  282 atatatttgtataatactaactaataagtaaaaataataattttg 326  Q
    |||||| | |||||||||||||| |||||||||||||||| ||||    
T  18257971 atatatgtatataatactaactattaagtaaaaataataaatttg 18258015  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 19149925 - 19149985
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggtgccc 332  Q
    |||||||||||||||||| || | || |||||| ||| ||||||||| ||||||| |||||    
T  19149925 ttaaaaagaaatatatttataaattattaactattaaataaaaataaaaattttgatgccc 19149985  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 42417977 - 42417929
Alignment:
Q  275 aaaagaaatatatttgtataatactaactaataagtaaaaataataatt 323  Q
    |||| |||||||||| |||| || |||||| ||||||||||||||||||    
T  42417977 aaaacaaatatatttatatagtattaactactaagtaaaaataataatt 42417929  T

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Target: scaffold0531 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 9755 - 9699
Alignment:
Q  272 ttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattttggt 328  Q
    ||||||||| |||||| | |||| ||||||||| ||| |||||||||||||||||||    
T  9755 ttaaaaagatatatatctatatagtactaactactaaataaaaataataattttggt 9699  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 18610 - 18557
Alignment:
Q  271 gttaaaaagaaatatatttgtataatactaactaataagtaaaaataataattt 324  Q
    |||||||||||||| || | ||||  ||||||||||||||||||||| ||||||    
T  18610 gttaaaaagaaatacatgtatataccactaactaataagtaaaaatattaattt 18557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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