View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13454_high_1 (Length: 525)

Name: NF13454_high_1
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13454_high_1
NF13454_high_1
[»] chr4 (19 HSPs)
chr4 (27-236)||(712398-712607)
chr4 (27-236)||(738005-738214)
chr4 (27-236)||(747574-747783)
chr4 (301-525)||(712672-712899)
chr4 (301-409)||(747848-747956)
chr4 (418-525)||(752009-752119)
chr4 (306-351)||(16955438-16955483)
chr4 (306-351)||(53170491-53170536)
chr4 (306-346)||(600776-600816)
chr4 (306-346)||(50483280-50483320)
chr4 (304-350)||(4419242-4419288)
chr4 (313-355)||(25504269-25504311)
chr4 (306-350)||(34107780-34107824)
chr4 (304-347)||(53098403-53098446)
chr4 (303-350)||(54190932-54190979)
chr4 (306-349)||(56462190-56462233)
chr4 (306-356)||(7536655-7536705)
chr4 (307-348)||(46391399-46391440)
chr4 (313-350)||(50464387-50464424)
[»] chr1 (11 HSPs)
chr1 (306-355)||(20259881-20259930)
chr1 (306-351)||(21472981-21473026)
chr1 (306-351)||(22346873-22346918)
chr1 (306-350)||(2898681-2898725)
chr1 (306-348)||(29169877-29169919)
chr1 (314-351)||(28041219-28041256)
chr1 (311-350)||(4862078-4862117)
chr1 (304-351)||(24177593-24177640)
chr1 (304-350)||(34644545-34644591)
chr1 (306-348)||(38731590-38731632)
chr1 (307-348)||(42919841-42919882)
[»] chr7 (17 HSPs)
chr7 (303-355)||(5972297-5972349)
chr7 (304-350)||(27521450-27521496)
chr7 (306-351)||(19277271-19277316)
chr7 (306-351)||(4501237-4501282)
chr7 (306-350)||(982928-982972)
chr7 (307-351)||(25187016-25187060)
chr7 (304-342)||(22197973-22198011)
chr7 (304-342)||(22239810-22239848)
chr7 (306-348)||(43856855-43856897)
chr7 (306-351)||(21326922-21326967)
chr7 (314-351)||(24527567-24527604)
chr7 (306-351)||(41117854-41117899)
chr7 (304-350)||(40726562-40726608)
chr7 (306-351)||(5825251-5825296)
chr7 (306-346)||(9281215-9281255)
chr7 (306-346)||(9292186-9292226)
chr7 (371-403)||(41767698-41767730)
[»] chr6 (9 HSPs)
chr6 (306-349)||(4166006-4166049)
chr6 (306-349)||(4206680-4206723)
chr6 (306-351)||(45761-45806)
chr6 (306-350)||(28625909-28625953)
chr6 (370-408)||(4166134-4166172)
chr6 (370-408)||(4206808-4206846)
chr6 (306-351)||(959559-959603)
chr6 (313-350)||(32115697-32115734)
chr6 (315-351)||(34554370-34554406)
[»] scaffold0148 (1 HSPs)
scaffold0148 (306-356)||(33223-33273)
[»] chr3 (17 HSPs)
chr3 (306-351)||(52741596-52741641)
chr3 (306-351)||(53785687-53785732)
chr3 (304-350)||(51234595-51234641)
chr3 (306-351)||(44814-44859)
chr3 (304-353)||(21552644-21552693)
chr3 (306-351)||(37133083-37133128)
chr3 (313-355)||(32546769-32546811)
chr3 (307-347)||(3443397-3443437)
chr3 (304-335)||(7900852-7900883)
chr3 (304-351)||(39583311-39583358)
chr3 (312-350)||(13582489-13582527)
chr3 (313-351)||(26856853-26856891)
chr3 (307-347)||(5338625-5338665)
chr3 (315-351)||(42206045-42206081)
chr3 (368-404)||(44198627-44198663)
chr3 (368-404)||(49017827-49017863)
chr3 (314-350)||(52411983-52412019)
[»] chr8 (9 HSPs)
chr8 (308-350)||(40223489-40223531)
chr8 (306-350)||(6592554-6592598)
chr8 (306-350)||(37514200-37514244)
chr8 (306-351)||(3821202-3821247)
chr8 (306-351)||(24125006-24125051)
chr8 (306-351)||(38815272-38815317)
chr8 (306-350)||(18804591-18804635)
chr8 (306-350)||(35740070-35740114)
chr8 (313-350)||(500207-500244)
[»] scaffold0490 (1 HSPs)
scaffold0490 (306-351)||(6312-6357)
[»] chr5 (5 HSPs)
chr5 (306-350)||(22188739-22188783)
chr5 (306-348)||(37873722-37873764)
chr5 (306-350)||(42921676-42921720)
chr5 (307-351)||(32269882-32269926)
chr5 (306-350)||(38875617-38875661)
[»] chr2 (10 HSPs)
chr2 (306-350)||(13413330-13413374)
chr2 (304-348)||(16351926-16351970)
chr2 (306-350)||(41867992-41868036)
chr2 (306-351)||(4413150-4413195)
chr2 (313-350)||(17344617-17344654)
chr2 (304-350)||(20142807-20142853)
chr2 (306-347)||(7760929-7760970)
chr2 (313-350)||(34814909-34814946)
chr2 (305-333)||(28224996-28225024)
chr2 (308-348)||(29808056-29808096)
[»] scaffold0119 (1 HSPs)
scaffold0119 (309-355)||(16080-16126)
[»] scaffold0224 (1 HSPs)
scaffold0224 (307-348)||(18449-18490)
[»] scaffold0009 (1 HSPs)
scaffold0009 (306-350)||(103085-103129)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 712398 - 712607
Alignment:
Q  27 accattaccaattcatcgtaccaacatgagaacatcaaaggataactcaaacatggaccatttatttccacttacactccaatgcaagtcacatcaccat 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  712398 accattaccaattcatcgtaccaacatgagaacatcaaaagataactcaaacatggaccatttatttccacttacactccaatgcaagtcacatcaccat 712497  T
Q  127 gtgccctaagtctccaaggaagtgttcatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  712498 gtgccctaagtctccaaggaagtgttcatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 712597  T
Q  227 tatgttaggg 236  Q
    ||||||||||    
T  712598 tatgttaggg 712607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 738214 - 738005
Alignment:
Q  27 accattaccaattcatcgtaccaacatgagaacatcaaaggataactcaaacatggaccatttatttccacttacactccaatgcaagtcacatcaccat 126  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  738214 accattaccaattcatcgtaccaacatgagaacatcaaaagataactcaaacatggaccatttatttccacttacactccaatgcaagtcacatcaccat 738115  T
Q  127 gtgccctaagtctccaaggaagtgttcatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 226  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  738114 gtgccctaagtctccaaggaagtgtncatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 738015  T
Q  227 tatgttaggg 236  Q
    ||||||||||    
T  738014 tatgttaggg 738005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 27 - 236
Target Start/End: Original strand, 747574 - 747783
Alignment:
Q  27 accattaccaattcatcgtaccaacatgagaacatcaaaggataactcaaacatggaccatttatttccacttacactccaatgcaagtcacatcaccat 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  747574 accattaccaattcatcgtaccaacatgagaacatcaaaggataactcaaacatggaccatttatttcaacttacactccaatgcaagtcacatcaccat 747673  T
Q  127 gtgccctaagtctccaaggaagtgttcatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 226  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747674 gtgccttaagtctccaaggaagtgttcatatgaatatgacaattgggaaacagatatacacgtgtctacggttcattagtagttgtgctactatatgtta 747773  T
Q  227 tatgttaggg 236  Q
    ||||||||||    
T  747774 tatgttaggg 747783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 301 - 525
Target Start/End: Original strand, 712672 - 712899
Alignment:
Q  301 aatatcagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaattaagttcatgaatgttgtccgcttaccttctattcaaatgtaaat 400  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  712672 aatatcagaggttgttgtccttctacatagagtttaaaaggtcatgcatagtaattaagttcatgaatgttatccgcttaccttctattcaaatgtaaat 712771  T
Q  401 aatatatatnnnnnnnntataccaaccagtattcaattacaccgggactcggcatccaagaaaactatattaaaaaatgttacatgaattgcatgcttga 500  Q
    |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  712772 aatatatataaaaaaaatataccaaccagtattcaattacaccgggactcggcatccaagaaaactatattaaaaaatgttacatgaattgcatgcttga 712871  T
Q  501 aga-tgtaaa--tctattgagagtcaaa 525  Q
    ||| ||||||  ||||||||||||||||    
T  712872 agattgtaaaagtctattgagagtcaaa 712899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 301 - 409
Target Start/End: Original strand, 747848 - 747956
Alignment:
Q  301 aatatcagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaattaagttcatgaatgttgtccgcttaccttctattcaaatgtaaat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  747848 aatatcagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaattaagttcatgaatgttgtccgcttaccttctattcaaatgtaaat 747947  T
Q  401 aatatatat 409  Q
    |||||||||    
T  747948 aatatatat 747956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 418 - 525
Target Start/End: Original strand, 752009 - 752119
Alignment:
Q  418 tataccaaccagtattcaattacaccgggactcggcatccaagaaaactatattaaaaaatgttacatgaattgcatgcttgaaga-tgtaaa--tctat 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||    
T  752009 tataccaaccagtattcaattacaccgggactcggcatccaagaaaactatattaaaaaatgttacatgaattgcatgcttgaagattgtaaaagtctat 752108  T
Q  515 tgagagtcaaa 525  Q
    |||||||||||    
T  752109 tgagagtcaaa 752119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 16955483 - 16955438
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||    
T  16955483 cagaggttgctgaccttctacatagagttcaaaaggtcatgcatag 16955438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 53170536 - 53170491
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  53170536 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatag 53170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 600776 - 600816
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatg 346  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  600776 cagaggttgttgaccttctacatagagttcaaaaggtcatg 600816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 50483280 - 50483320
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatg 346  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  50483280 cagaggttgttgaccttctacatagagttcaaaaggtcatg 50483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 4419288 - 4419242
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  4419288 atcagaggttgttgaccttctacatagagttcaaagggttatgcata 4419242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 25504311 - 25504269
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcatagtaat 355  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  25504311 tgttgaccttttaaatagagtttaaaaggtcatgcatagtaat 25504269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 34107780 - 34107824
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||||||||| |||| ||||||||||    
T  34107780 cagaggctgttgaccttctacatagagttcaaaaagtcatgcata 34107824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 53098446 - 53098403
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgc 347  Q
    ||||||||||||| ||||||||||||||||| ||| ||||||||    
T  53098446 atcagaggttgttaaccttctacatagagttcaaatggtcatgc 53098403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 54190932 - 54190979
Alignment:
Q  303 tatcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||| |||||||||| ||| || ||||||||    
T  54190932 tatcagaggttgttgaccttccacatagagttcaaagggccatgcata 54190979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 56462190 - 56462233
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcat 349  Q
    ||||||||||||||||||||||||||||| ||| | ||||||||    
T  56462190 cagaggttgttgaccttctacatagagttcaaaggatcatgcat 56462233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 7536655 - 7536705
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaatt 356  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||| ||||    
T  7536655 cagaggttgttgaccttctacatagagttcaaatgatcgtgcatagcaatt 7536705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 46391399 - 46391440
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||||||||||||||| |||| ||||| |||||||    
T  46391399 agaggttgttgaccttctacataaagttcaaaagatcatgca 46391440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 50464387 - 50464424
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  50464387 tgttgaccttctacgtagagtttaaagggtcatgcata 50464424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 20259881 - 20259930
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaat 355  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20259881 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagtaat 20259930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 21473026 - 21472981
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  21473026 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatag 21472981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 22346918 - 22346873
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||    
T  22346918 cagaggttgttgaccttctacacagagttcaaaaggtcatgcatag 22346873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 2898725 - 2898681
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||    
T  2898725 cagaggttgttgaccttctacatagagttcaaaagatcatgcata 2898681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 29169877 - 29169919
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||| ||||||||||||||||| |||||||||||||    
T  29169877 cagaggttgttaaccttctacatagagttcaaaaggtcatgca 29169919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 28041219 - 28041256
Alignment:
Q  314 gttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  28041219 gttgaccttctacatagagttcaaaaggtcatgcatag 28041256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 350
Target Start/End: Original strand, 4862078 - 4862117
Alignment:
Q  311 gttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  4862078 gttgttgaccttctacatagagttcaaagggtcatgcata 4862117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 24177593 - 24177640
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||||||    
T  24177593 atcagaggctgtttaccttctacatagagttcaaaaagtcatgcatag 24177640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 34644591 - 34644545
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||||  ||| ||| |||||||    
T  34644591 atcagaggttgttgaccttctacatagagtccaaagggttatgcata 34644545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 38731632 - 38731590
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||    
T  38731632 cagaggttgttaaccttctacatagagttcaaagggtcatgca 38731590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 42919882 - 42919841
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  42919882 agagattgttaaccttctacatagagtttaaagggtcatgca 42919841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 5972297 - 5972349
Alignment:
Q  303 tatcagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaat 355  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  5972297 tatcagaggttgttgaccttctacatagagttcaaaatgtcatgcatagtaat 5972349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 27521496 - 27521450
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  27521496 atcagaggttgttgaccttctacatagagttcaaaaggtcatgcata 27521450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 19277316 - 19277271
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19277316 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatag 19277271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 4501282 - 4501237
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||    
T  4501282 cagaggttgttgaccttctacatagagttcaaaagttcatgcatag 4501237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 982972 - 982928
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||| |||||||||||||||| |||||||||||||||    
T  982972 cagaggttgttggccttctacatagagttcaaaaggtcatgcata 982928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 25187016 - 25187060
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  25187016 agaggttgttgaccttctatatagagttcaaaaggtcatgcatag 25187060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 342
Target Start/End: Complemental strand, 22198011 - 22197973
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggt 342  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  22198011 atcagaggttgttgaccttctacatagagttcaaaaggt 22197973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 22239810 - 22239848
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggt 342  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  22239810 atcagaggttgttgaccttctacatagagttcaaaaggt 22239848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 43856897 - 43856855
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  43856897 cagaggttgttgaccttctacatagagttcaaagggtcatgca 43856855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 21326922 - 21326967
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||    
T  21326922 cagaggctgttgaccttttacatagagttcaaaaggtcatgcatag 21326967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 24527604 - 24527567
Alignment:
Q  314 gttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  24527604 gttgaccttctacatagagttcaaaaggtcatgcatag 24527567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 41117854 - 41117899
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||| |||||| ||||||||||||||||||||||| ||||||||||    
T  41117854 cagatgttgttaaccttctacatagagtttaaaagatcatgcatag 41117899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 40726562 - 40726608
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||||  ||| ||| |||||||    
T  40726562 atcagaggttgttgaccttctacatagagtccaaagggttatgcata 40726608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 5825296 - 5825251
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||  ||| ||| ||||||||    
T  5825296 cagaggttgttgaccttctacatagagtcgaaagggttatgcatag 5825251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 9281215 - 9281255
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatg 346  Q
    |||| |||||||||||||||||||||||| ||| |||||||    
T  9281215 cagatgttgttgaccttctacatagagttcaaagggtcatg 9281255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 9292186 - 9292226
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatg 346  Q
    |||| |||||||||||||||||||||||| ||| |||||||    
T  9292186 cagatgttgttgaccttctacatagagttcaaagggtcatg 9292226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 41767698 - 41767730
Alignment:
Q  371 tgtccgcttaccttctattcaaatgtaaataat 403  Q
    ||||||||| |||||||||||||||||||||||    
T  41767698 tgtccgcttgccttctattcaaatgtaaataat 41767730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 4166006 - 4166049
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcat 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4166006 cagaggttgttgaccttctacatagagtttaaaaggtcatgcat 4166049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 349
Target Start/End: Original strand, 4206680 - 4206723
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcat 349  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  4206680 cagaggttgttgaccttctacatagagttcaaaaggtcatgcat 4206723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 45761 - 45806
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  45761 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatag 45806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 28625953 - 28625909
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||| |||||||||| |||| |||||||||||||||    
T  28625953 cagaggttgttgagcttctacataaagttcaaaaggtcatgcata 28625909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 4166134 - 4166172
Alignment:
Q  370 ttgtccgcttaccttctattcaaatgtaaataatatata 408  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4166134 ttgtccgcttgtcttctattcaaatgtaaataatatata 4166172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Original strand, 4206808 - 4206846
Alignment:
Q  370 ttgtccgcttaccttctattcaaatgtaaataatatata 408  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  4206808 ttgtccgcttgtcttctattcaaatgtaaataatatata 4206846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 959603 - 959559
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||    
T  959603 cagaggttgttgaccttctacgta-agttcaaaaggtcatgcatag 959559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 32115734 - 32115697
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  32115734 tgttgaccttctacaaagagttcaaaaggtcatgcata 32115697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Original strand, 34554370 - 34554406
Alignment:
Q  315 ttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  34554370 ttgactttctacatagagtttaaaaggtcatgtatag 34554406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 33273 - 33223
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatagtaatt 356  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  33273 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatagcaatt 33223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 52741596 - 52741641
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  52741596 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatag 52741641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 53785732 - 53785687
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  53785732 cagaggttgttgaccttctacatagagttcaaaaggtcatgcatag 53785687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 304 - 350
Target Start/End: Complemental strand, 51234641 - 51234595
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  51234641 atcagaggttgttgaccttctacatagagttcaaaaggttatgcata 51234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 44859 - 44814
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  44859 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatag 44814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 21552693 - 21552644
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcatagta 353  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||    
T  21552693 atcagagactgttgaccttctacatagagttcaaaaggtcatgcatagta 21552644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 37133083 - 37133128
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||||||||||||||||||||||||  |||||||||||||||    
T  37133083 cagaggttgttgaccttctacatagagttctaaaggtcatgcatag 37133128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 32546811 - 32546769
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcatagtaat 355  Q
    |||||||||||||||||||||| |||| |||||||||||||||    
T  32546811 tgttgaccttctacatagagttcaaaaagtcatgcatagtaat 32546769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 3443397 - 3443437
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgc 347  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  3443397 agaggttgttgaccttctacatagagttcaaagggtcatgc 3443437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 335
Target Start/End: Complemental strand, 7900883 - 7900852
Alignment:
Q  304 atcagaggttgttgaccttctacatagagttt 335  Q
    ||||||||||||||||||||||||||||||||    
T  7900883 atcagaggttgttgaccttctacatagagttt 7900852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 39583311 - 39583358
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||| |||||||||||||||| ||||||||| ||| ||||||||||||    
T  39583311 atcataggttgttgaccttctgcatagagttcaaagggtcatgcatag 39583358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 13582527 - 13582489
Alignment:
Q  312 ttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  13582527 ttgttgaccttctacagagagttcaaaaggtcatgcata 13582489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 26856853 - 26856891
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  26856853 tgttgaccttctacatagagttcaaagggtcatgcatag 26856891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 5338665 - 5338625
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgc 347  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  5338665 agagattgttgacattctacatagagttcaaaaggtcatgc 5338625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 351
Target Start/End: Complemental strand, 42206081 - 42206045
Alignment:
Q  315 ttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  42206081 ttgacattctacatagagtttaaatggtcatgcatag 42206045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 44198663 - 44198627
Alignment:
Q  368 tgttgtccgcttaccttctattcaaatgtaaataata 404  Q
    |||||||||||| |||||||||||| |||||||||||    
T  44198663 tgttgtccgcttgccttctattcaagtgtaaataata 44198627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 49017863 - 49017827
Alignment:
Q  368 tgttgtccgcttaccttctattcaaatgtaaataata 404  Q
    |||||||||||| |||||||||||| |||||||||||    
T  49017863 tgttgtccgcttgccttctattcaagtgtaaataata 49017827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 52411983 - 52412019
Alignment:
Q  314 gttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  52411983 gttgaccttctacatagagttcaaagggtcatgcata 52412019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 40223489 - 40223531
Alignment:
Q  308 gaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  40223489 gaggttgttgaccttctacatagagttcaaaaggtcatgcata 40223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 6592598 - 6592554
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||    
T  6592598 cagaggttgttgaccttctgcatagagttcaaaaggtcatgcata 6592554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 37514244 - 37514200
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  37514244 cagaggctgttgaccttctacatagagttcaaaaggtcatgcata 37514200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 3821247 - 3821202
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||||||||||||||||||||||||||| ||| ||| ||||||||    
T  3821247 cagaggttgttgaccttctacatagagttcaaagggtaatgcatag 3821202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 24125051 - 24125006
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||||||| ||||||||||| |||| ||||||||||||||||    
T  24125051 cagaggttgttggccttctacataaagttcaaaaggtcatgcatag 24125006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 38815317 - 38815272
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||    
T  38815317 cagagggtgttgaccttctacatagagttcaaagggtcatgcatag 38815272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 18804635 - 18804591
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| ||||||||||||||||||| || |||||||||||||||    
T  18804635 cagaggctgttgaccttctacatagatttcaaaaggtcatgcata 18804591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 35740070 - 35740114
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||| ||||||||||||||||||||||| |||| ||||||||||    
T  35740070 cagagattgttgaccttctacatagagttcaaaaagtcatgcata 35740114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 500244 - 500207
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  500244 tgttggccttctacatagagttcaaaaggtcatgcata 500207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 6357 - 6312
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||    
T  6357 cagaggctgttgaccttctacatagagttcaaaaggtcatgcatag 6312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 22188739 - 22188783
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  22188739 cagaggctgttgaccttctacatagagttcaaaaggtcatgcata 22188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 37873722 - 37873764
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  37873722 cagaggttgttgaccttctacatagagttcaaagggtcatgca 37873764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 42921720 - 42921676
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||| |||||||||||||||| | |||||||||||||    
T  42921720 cagaggttgttggccttctacatagagttcagaaggtcatgcata 42921676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 32269882 - 32269926
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    |||||||||||||||||| |||  |||| ||||||||||||||||    
T  32269882 agaggttgttgaccttctgcatgaagttcaaaaggtcatgcatag 32269926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 38875661 - 38875617
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| || ||||||||||| ||||||| |||||||||||||||    
T  38875661 cagaggctgctgaccttctacgtagagttcaaaaggtcatgcata 38875617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 13413374 - 13413330
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  13413374 cagaggctgttgaccttctacatagagttcaaaaggtcatgcata 13413330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 16351926 - 16351970
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||    
T  16351926 atcagaggttgttgaccttctacatagagttcaaatggtcatgca 16351970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 41867992 - 41868036
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||||||||| |||||||||||||||    
T  41867992 cagaggctgttgaccttctacatagagttcaaaaggtcatgcata 41868036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 4413150 - 4413195
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 351  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  4413150 cagagattgttgaccttctacatagggttcaaaaggtcatgcatag 4413195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 17344654 - 17344617
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||||||||||||| |||||||||||||||    
T  17344654 tgttgaccttctacatagagttcaaaaggtcatgcata 17344617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 20142807 - 20142853
Alignment:
Q  304 atcagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||| |||||||||||||| ||||||||||| |||||||||| ||||    
T  20142807 atcaaaggttgttgaccttatacatagagttcaaaaggtcatacata 20142853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 7760929 - 7760970
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgc 347  Q
    ||||||||||||||||||||||||||||| ||| | ||||||    
T  7760929 cagaggttgttgaccttctacatagagttcaaaggatcatgc 7760970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 34814909 - 34814946
Alignment:
Q  313 tgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  34814909 tgttgaccttctacatagagttcaaatggtcatgcata 34814946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 333
Target Start/End: Complemental strand, 28225024 - 28224996
Alignment:
Q  305 tcagaggttgttgaccttctacatagagt 333  Q
    |||||||||||||||||||||||||||||    
T  28225024 tcagaggttgttgaccttctacatagagt 28224996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 29808096 - 29808056
Alignment:
Q  308 gaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    ||||||||||||||| ||||||||||||||  |||||||||    
T  29808096 gaggttgttgaccttttacatagagtttaagtggtcatgca 29808056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 16126 - 16080
Alignment:
Q  309 aggttgttgaccttctacatagagtttaaaaggtcatgcatagtaat 355  Q
    ||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  16126 aggttattgactttctacatagagttcaaagggtcatgcatagtaat 16080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 18449 - 18490
Alignment:
Q  307 agaggttgttgaccttctacatagagtttaaaaggtcatgca 348  Q
    |||| ||||| ||||||||||||||||||||| |||||||||    
T  18449 agagattgttaaccttctacatagagtttaaagggtcatgca 18490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 103129 - 103085
Alignment:
Q  306 cagaggttgttgaccttctacatagagtttaaaaggtcatgcata 350  Q
    |||||| |||||||||||||||| ||| | |||||||||||||||    
T  103129 cagaggctgttgaccttctacatcgagctcaaaaggtcatgcata 103085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University