View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13454_high_2 (Length: 525)
Name: NF13454_high_2
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 5 - 515
Target Start/End: Complemental strand, 39396575 - 39396066
Alignment:
| Q |
5 |
atttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataactttactgaatcaagatttgtccaaaatacggcactcgcagcatccaagtcct |
104 |
Q |
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| T |
39396575 |
atttgttttgtgtcaaggatcaatatcaaatgaaacatgttcaataacttcactgaatcaagatgtgtccaaaatacggcacttgcaacatccaagtcct |
39396476 |
T |
|
| Q |
105 |
ccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataagtact |
204 |
Q |
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| T |
39396475 |
ccctctttcttgtcaaatacatatactttgcacattctattaagttcaatagctgctgcatttttgtgtaagaaactctcaaagaagattgataagtact |
39396376 |
T |
|
| Q |
205 |
ccatgcccttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccaaatatgaatctcattgttgtgtggtactttttcgtatc |
304 |
Q |
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| T |
39396375 |
ccatgcc-ttatatttgggtagtacacgtgagattatctttgttcaatctttcaatgtaccagatatgaatctcattgtcatgtggtactttttcgtatc |
39396277 |
T |
|
| Q |
305 |
ataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagagtattttctaattcgtcttaggtggtctaaatgattgttttagttt |
404 |
Q |
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| T |
39396276 |
ataatctatttttcctcttcattcaaatgtcccaaataaggatgaccttttagggtattttctaattcgtcttaggtggtctaaatgattgttttagttt |
39396177 |
T |
|
| Q |
405 |
gatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaacaaacagacacgaaatagggtctcaaaataggtgtacg |
504 |
Q |
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| T |
39396176 |
gatttgggggaaattatacgccacttttcaaacaggtattcaaacaaataaaatagaagaaaccaacagacacgaaatagggtctcaaaataggtgtacg |
39396077 |
T |
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| Q |
505 |
tataatctgtg |
515 |
Q |
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| T |
39396076 |
tataatctgtg |
39396066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 43597970 - 43597914
Alignment:
| Q |
140 |
tctattaagttcaatagctgctgcattgttgtgtaagaaactctcaaagaagattgataa |
199 |
Q |
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| T |
43597970 |
tctattaagttcaatagctgc---atttttgtgtaagaacctctcaaagaagatcgataa |
43597914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 37104294 - 37104369
Alignment:
| Q |
185 |
aaagaagattgataagtactccatgccct-tatatttgggtagtacacgtgagattatctttgttcaatctttcaa |
259 |
Q |
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||||| |||||||||||||| |||||||| || || ||||| ||||| | ||||||||||||||| ||||||||| |
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| T |
37104294 |
aaagatgattgataagtacttcatgccctataaatatgggtggtacatgcaagattatctttgttcgatctttcaa |
37104369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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