View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13454_high_3 (Length: 483)
Name: NF13454_high_3
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 20217253 - 20217721
Alignment:
| Q |
9 |
agcacagatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217253 |
agcacaaatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
20217352 |
T |
|
| Q |
109 |
tcataatgtaattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
208 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217353 |
tcataatgtaattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
20217452 |
T |
|
| Q |
209 |
ttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaa |
308 |
Q |
| |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20217453 |
ttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaa |
20217547 |
T |
|
| Q |
309 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217548 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
20217647 |
T |
|
| Q |
409 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
482 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20217648 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
20217721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 20236851 - 20237319
Alignment:
| Q |
9 |
agcacagatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20236851 |
agcacaaatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
20236950 |
T |
|
| Q |
109 |
tcataatgtaattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20236951 |
tcataatgtaattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
20237050 |
T |
|
| Q |
209 |
ttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaa |
308 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
20237051 |
ttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaa |
20237145 |
T |
|
| Q |
309 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20237146 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
20237245 |
T |
|
| Q |
409 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20237246 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
20237319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 482
Target Start/End: Original strand, 44301765 - 44302233
Alignment:
| Q |
9 |
agcacagatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301765 |
agcacaaatgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagatgaataatgtcaacataaaca |
44301864 |
T |
|
| Q |
109 |
tcataatgtaattaatggttctcaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
208 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44301865 |
tcataatgtaattaatggttctgaaaaatgaaaccatttatatatgtgagataagaatgaaaaataaaatttaagaattaatattatatgtgcctaatct |
44301964 |
T |
|
| Q |
209 |
ttaaattgacttgatcttcttgcaaattgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaattgaggagtaatgcatacacaattaa |
308 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
44301965 |
ttaaattgactcgatcttcttgcaagttgcatccaagtcaaatgacaaattagaatgcgcataatgcatataaa-----gagtaatgcatacacaattaa |
44302059 |
T |
|
| Q |
309 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44302060 |
cttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgagagaac |
44302159 |
T |
|
| Q |
409 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44302160 |
attcatcaaacaaagcagtttccttccttgaattgaccttggtttctcttaaattgatgtggaatgccataagt |
44302233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 306 - 404
Target Start/End: Complemental strand, 39654125 - 39654027
Alignment:
| Q |
306 |
taacttaccaagcatatagaacaagtcaagtcaatgtcaattttgatagaatcaaagagatcacaagtaagtgatggttttccatccttaaatgtgaga |
404 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39654125 |
taacttaccaaacatatagagcaagtcagatcaatatcaattttgatggaatcaaagagctcacaagcaagtgatggttttccatccttaaatgtgaga |
39654027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 39654538 - 39654467
Alignment:
| Q |
17 |
tgtaacagaatatatggccgcaagtcagagaaactggatcaaacacagtgtcctgtcattgaagagccagat |
88 |
Q |
| |
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|||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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|
| T |
39654538 |
tgtagcagaatatgtggccacaagtcagagaaactggatcaaacactgtgtcctgtcatggaagagccagat |
39654467 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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