View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13454_high_4 (Length: 404)
Name: NF13454_high_4
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 39019121 - 39019514
Alignment:
| Q |
1 |
acatcttccttgtttcgttacatttctcaatcttcaagggttttgtcacgatcacgatgtctgcaatttgcatttcagttctgcagtatgctaagttgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39019121 |
acatcttccttgtttcgttacatttctcaatcttcaagggttttgtaacgatcacgatgtctgcaatttgcatctcagttctgcagtatgctaagttgat |
39019220 |
T |
|
| Q |
101 |
tctttgttttcttacttgatgacgaatgaaatgtaatttggtctctatatgcttcctcctcccaagagatataattttttagctaagttgatggttgatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39019221 |
tctttgttttcttacttgatgacgaatgaaatgtaatttggtctctatatgcttcctcctcccaagagatataattttttagctaagttgatggttgatt |
39019320 |
T |
|
| Q |
201 |
tgttgtcaatcttgagcttcattgcttcttcatttccaactccaatctcacacaacaaagactgca---aaactcactggtacagtgcatgagaagaaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39019321 |
tgttgtcaatcttgagcttcattgcttcttcatttccaactccaatctcacacaacaaagactgcaatcaaactcactggtacagtgcatgagaagaaaa |
39019420 |
T |
|
| Q |
298 |
tataaattacgcttcacacaatgacaattccacaagtgtttgcatagctgagtccaaagaaattggtgtttcaaatagcttaaatacacatctc |
391 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39019421 |
tataaattacgcttcacacaatgagaattccacaagtgtttgcatagctgagtccaaagaaattggtgtttcaaatagcttaaatacacatctc |
39019514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University