View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13454_high_5 (Length: 376)

Name: NF13454_high_5
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13454_high_5
NF13454_high_5
[»] chr7 (6 HSPs)
chr7 (10-257)||(26646263-26646509)
chr7 (241-323)||(26713278-26713359)
chr7 (22-95)||(26713513-26713586)
chr7 (129-252)||(26713383-26713502)
chr7 (48-84)||(26611826-26611862)
chr7 (10-50)||(26627040-26627080)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 26646509 - 26646263
Alignment:
Q  10 aatattggggcagaagagtttattccaccacgagattccaactgaatggaataaagtttatagattattgctactagtgccaagatannnnnnnnnnnnn 109  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||                  
T  26646509 aatattggggcagaagagtttattccaccacgagattcca-ctgaatggaacaaagtttatagattattgctactagtgccaagattttttttctttgtt 26646411  T
Q  110 nnnggatctatataatatagaacggttgtgcgttgtcctaattgtttattgtgttaaacttaagattgtgactaattagttcttttattatnnnnnnnnn 209  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||             
T  26646410 tttggatctatataatatagaacggttgtgcgttgtcctaattgtttattgtgttaaacttaagattgtgactaattggttcttttattataaaaaaaaa 26646311  T
Q  210 ctaatttttatcatcaacttaacggttaaaatcacaatacattatcac 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646310 ctaatttttatcatcaacttaacggttaaaatcacaatacattatcac 26646263  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 26713359 - 26713278
Alignment:
Q  241 tcacaatacattatcacaaatttgaaatgtagtaataaaaatttctctttgctttacgtgagttaatttatctttatttgttt 323  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  26713359 tcacaatacat-atcacagatttgaaatgcagtaataaaaatttctctttgctttacgtgagcttatttatctttatttgttt 26713278  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 26713586 - 26713513
Alignment:
Q  22 gaagagtttattccaccacgagattccaactgaatggaataaagtttatagattattgctactagtgccaagat 95  Q
    |||||||||||||||||||||||||||||| |||||||| || ||||||||||||| |||||||||| ||||||    
T  26713586 gaagagtttattccaccacgagattccaaccgaatggaacaacgtttatagattatcgctactagtgtcaagat 26713513  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 252
Target Start/End: Complemental strand, 26713502 - 26713383
Alignment:
Q  129 gaacggttgtgcgttgtcctaattgtttattgtgttaaacttaagattgtgactaattagttcttttattatnnnnnnnnn--ctaatttttatcatcaa 226  Q
    |||||||||||| ||||| ||||||||||||||| |||      ||| |||||||||||||| |||||||||           |||||||||||||| ||    
T  26713502 gaacggttgtgcattgtcttaattgtttattgtggtaa------gatggtgactaattagtttttttattataaaaaaaaaaactaatttttatcattaa 26713409  T
Q  227 cttaacggttaaaatcacaatacatt 252  Q
    ||||||||||||||||||||||||||    
T  26713408 cttaacggttaaaatcacaatacatt 26713383  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 26611862 - 26611826
Alignment:
Q  48 caactgaatggaataaagtttatagattattgctact 84  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  26611862 caactgaatggaacaaagttaatagattattgctact 26611826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 26627080 - 26627040
Alignment:
Q  10 aatattggggcagaagagtttattccaccacgagattccaa 50  Q
    ||||||||||   ||||||||||||||||||||||||||||    
T  26627080 aatattgggggtcaagagtttattccaccacgagattccaa 26627040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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