View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13454_high_6 (Length: 339)
Name: NF13454_high_6
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 29 - 339
Target Start/End: Complemental strand, 1792321 - 1792011
Alignment:
| Q |
29 |
catatactaatattaaggggataaggaacactaatgatacatcaatagcaacaataatacagcgacatttaaaatgccagtaaacctacgaatcaaatat |
128 |
Q |
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| T |
1792321 |
catatactaatattaaggggataaggaacactaatgatacatcaatagcaacaataatacagcgacatttaaaatgccagtaaacctacgaatcaaatat |
1792222 |
T |
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| Q |
129 |
tgaaataactacgggtaatcagactgctgaccaatgttgtcattagcagctacagcatcggtacagcactatgtcaaagcagaatttgaacaaatcgcta |
228 |
Q |
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| T |
1792221 |
tgaaataactacgggtaatcagactgctgatcaatgttgtcattagcagctacagcatcggtacagcactatgtcaaagcagaatttgaacaaatcgcta |
1792122 |
T |
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| Q |
229 |
ttgttttgcgattagtacataatattgtgaaatgggtgtaatttaaacaaatcgctattttccacgatccacgagtgacaatgcttctgctaatgtagtt |
328 |
Q |
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| T |
1792121 |
ttgttttgcgattagtacataatattttgaaatgggtgtaatttaaacaaatcgctattttccacgatccacgattgacaatgcttctgctaatgtagtt |
1792022 |
T |
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| Q |
329 |
aatgacaaaag |
339 |
Q |
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| T |
1792021 |
aatgacaaaag |
1792011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 37538416 - 37538448
Alignment:
| Q |
206 |
agcagaatttgaacaaatcgctattgttttgcg |
238 |
Q |
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| T |
37538416 |
agcagaatttgaacaaatcgctattgttttgcg |
37538448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Original strand, 2732936 - 2732965
Alignment:
| Q |
211 |
aatttgaacaaatcgctattgttttgcgat |
240 |
Q |
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| T |
2732936 |
aatttgaacaaatcgctattgttttgcgat |
2732965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 33390686 - 33390657
Alignment:
| Q |
206 |
agcagaatttgaacaaatcgctattgtttt |
235 |
Q |
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| T |
33390686 |
agcagaatttgaacaaatcgctattgtttt |
33390657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 28804331 - 28804359
Alignment:
| Q |
206 |
agcagaatttgaacaaatcgctattgttt |
234 |
Q |
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| T |
28804331 |
agcagaatttgaacaaatcgctattgttt |
28804359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 33044032 - 33044004
Alignment:
| Q |
206 |
agcagaatttgaacaaatcgctattgttt |
234 |
Q |
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| T |
33044032 |
agcagaatttgaacaaatcgctattgttt |
33044004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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