View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13454_high_7 (Length: 321)
Name: NF13454_high_7
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_7 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 6359257 - 6359427
Alignment:
| Q |
1 |
gttattaaatatattgtttgataccttcaagctttacagaaatctcgatccaataacctaatcccttcgtttttccactcataatcattgtacatcagct |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
6359257 |
gttattaaatatattgtttgataccttcaagcattacagaaatctcgatccaataacctaatcccttcgtttttccactcataatcgttgtacatcagct |
6359356 |
T |
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| Q |
101 |
gcctccaacaacaccagcagcaataccttcgttgttggcaccatcattgtgattgtcatcagcacacacca |
171 |
Q |
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| T |
6359357 |
gcctccaacaacaccagcagcaataccttcgttgttggcaccatcattgtgattgtcatcagcacacacca |
6359427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 24493497 - 24493626
Alignment:
| Q |
163 |
cacacaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaa |
262 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24493497 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagccaaacaaaaa |
24493596 |
T |
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| Q |
263 |
gtatttgttagtcacaaaacatcctttacc |
292 |
Q |
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| T |
24493597 |
gtatttgttggtcacaaaacatcctttacc |
24493626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 92862 - 92951
Alignment:
| Q |
163 |
cacacaccacaccaccattggagcgcatatcaacgtcatcctctgaatttttgagacccatcacacgatccatgcataacatacacaagc |
252 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
92862 |
cacaaaccacaccaccattggagcgcatatcaacgtcatcctctgaatatttgagacccatcacacgatccatgcataacatacacaagc |
92951 |
T |
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