View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13454_high_8 (Length: 306)
Name: NF13454_high_8
Description: NF13454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13454_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 34873902 - 34873608
Alignment:
| Q |
1 |
ttcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcct |
100 |
Q |
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| T |
34873902 |
ttcaacaatgtacacgaacaagcttcaagaactatgtcaaaaaaactcataccctcttcccgaataccaaacaacccatgaaggaccactgcacaatcct |
34873803 |
T |
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| Q |
101 |
cttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgctt |
200 |
Q |
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| T |
34873802 |
cttttctcatcaaccgttaccgttaagtccatttccttcacttcaccagaacctgcaagcacccttaaggcatctcaagagtttgttgcgatggttgctt |
34873703 |
T |
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| Q |
201 |
ttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattgtct |
293 |
Q |
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| T |
34873702 |
ttcatcatttcctgcaaaatgaaaacaccagttaagtcttgcaatctatgatgtttctttcctcaactgatatataaatgcatttttcattgtct |
34873608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 34871720 - 34872016
Alignment:
| Q |
1 |
ttcaacaatgtacacgaacaa--gcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatc |
98 |
Q |
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|||||||||||||| |||||| ||||||||||||||||| ||| || || |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34871720 |
ttcaacaatgtacaagaacaaaagcttcaagaactatgtcaaaaaaactcttacccacttcccaaataccaaacaacccatgaaggaccactgcacaatc |
34871819 |
T |
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| Q |
99 |
ctcttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgc |
198 |
Q |
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| T |
34871820 |
ctcttttttcatcaaccgttaccgttaagtctatttccttcacttcaccaaaaccagcaagcacccttaaggcatctcaagagtttgctgcgatggttgc |
34871919 |
T |
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| Q |
199 |
ttttcatcatttcctgcaaaatgaaaacaacagttaagtgttgcaatctatgatgtttctttcctcaactgatttataaatg--tttttcattgtct |
293 |
Q |
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| T |
34871920 |
ttttcatcatttcctgcaaaatgaaaacaacagttaagtcttgcaatccatgatgtttctttcctcaactgatttataaatgcatttttcattgtct |
34872016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 9911038 - 9911247
Alignment:
| Q |
1 |
ttcaacaatgtacacgaacaagcttcaagaactatgtcnnnnnnnctcatatcctcttctaaaataccaaacaacccatgaaggaccactgcacaatcct |
100 |
Q |
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|||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||||||||||| |||||| || |
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| T |
9911038 |
ttcaacaatgtacaagaccaagcttcaagaactatgtcaaaaaaattcataccctcttcccgaataccaaacaacccgtgaaggaccaccacacaattct |
9911137 |
T |
|
| Q |
101 |
cttttctcatcaactgttaccgttaagtccatttccttcacttcaccagaactagcaagcacccttaaggcatctcaagaatttgttgcgatggttgctt |
200 |
Q |
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| T |
9911138 |
cgtttctcaacaaccgttactgttaactccatttccttctcttctcctgaaccagcacgcaccattaagctgtctcaagattctgctgccatggttgctt |
9911237 |
T |
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| Q |
201 |
ttcatcattt |
210 |
Q |
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|||||||||| |
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| T |
9911238 |
ttcatcattt |
9911247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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