View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13455_high_2 (Length: 437)

Name: NF13455_high_2
Description: NF13455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13455_high_2
NF13455_high_2
[»] chr1 (1 HSPs)
chr1 (23-425)||(4697919-4698319)


Alignment Details
Target: chr1 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 23 - 425
Target Start/End: Complemental strand, 4698319 - 4697919
Alignment:
Q  23 agttcttagcctaactcaaatcagttgagtcatttcaatgttggtagttatgcttaactttgcacaaaagagtgtgtctttcttaacctaaatttagatc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698319 agttcttagcctaactcaaatcagttgagtcatttcaatgttggtagttatgcttaactttgcacaaaagagtgtgtctttcttaacctaaatttagatc 4698220  T
Q  123 taataaaaagttaattcgtgacagatgcagtgaattgaaacttgaaaattgtaaaaataggtcattgccagagatgttgctaaagcttgatcaatgacaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698219 taataaaaagttaattcgtgacagatgcagtgaattgaaacttgaaaattgtaaaaataggtcattgccagagatgttgctaaagcttgatcaatgacaa 4698120  T
Q  223 aactaacaacttgtcatttaggtaggcatttatatagtagcagtgaaattgatggttatgtatgtcttatatttacatgctttcactcacacatacacac 322  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||    
T  4698119 agctaacaacttgtcatttaggtaggcatttatatagtagcagtgaaattgatggttatgtatgtct--tatttacatgctttcactcacacatatacac 4698022  T
Q  323 gtttattttaaagaatataaatcttatcagtttttatacattcttctgtatactgaaaataagttttcttctgtttaattactttttctaaattaatgat 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4698021 gtttattttaaagaatataaatcttatcagtttttatacattcttctgtatactgaaaataagttttcttctgtttaattactttttctaaattaacgat 4697922  T
Q  423 gat 425  Q
    |||    
T  4697921 gat 4697919  T

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