View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13455_low_3 (Length: 513)

Name: NF13455_low_3
Description: NF13455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13455_low_3
NF13455_low_3
[»] chr1 (4 HSPs)
chr1 (238-493)||(30772850-30773103)
chr1 (86-232)||(18431611-18431755)
chr1 (96-238)||(22788364-22788508)
chr1 (139-220)||(6154604-6154683)
[»] chr2 (1 HSPs)
chr2 (86-237)||(16916344-16916491)
[»] chr6 (2 HSPs)
chr6 (93-232)||(5014070-5014213)
chr6 (96-221)||(16692978-16693108)
[»] chr7 (2 HSPs)
chr7 (86-231)||(46437312-46437453)
chr7 (155-221)||(38663019-38663084)
[»] chr5 (4 HSPs)
chr5 (86-232)||(424736-424876)
chr5 (93-232)||(18113738-18113878)
chr5 (186-221)||(25634440-25634475)
chr5 (94-131)||(17074657-17074694)
[»] chr3 (3 HSPs)
chr3 (96-240)||(26555473-26555615)
chr3 (96-151)||(52118379-52118434)
chr3 (185-221)||(2125280-2125316)
[»] chr8 (2 HSPs)
chr8 (96-150)||(28535248-28535302)
chr8 (186-239)||(28535191-28535244)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 238 - 493
Target Start/End: Complemental strand, 30773103 - 30772850
Alignment:
Q  238 attaccatgttagatacctattaagtttttgtgttataattatagtaaatagtaaatatatatacatttaagttgaccacaaattctagtttataattgg 337  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  30773103 attaccatgttagataccgattaattttttgtgttataattatagtaaatagtaaatatata--catttaagttgaccacaaattctagtttataattgg 30773006  T
Q  338 taaaaaatttaaaattattaaacggaacgttgcaacagaggtgatgtttgagtttgagacccagctttgatggattttttaaacgtgaatgtactttctt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30773005 taaaaaatttaaaattattaaacggaacgttgcaacagaggtgatgtttgagtttgagacccaactttgatggattttttaaacgtgaatgtactttctt 30772906  T
Q  438 gctgtaaatagaaaaataatagtacaattgcatgtgaaagatcattacgttcagtt 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30772905 gctgtaaatagaaaaataatagtacaattgcatgtgaaagatcattacgttcagtt 30772850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 18431611 - 18431755
Alignment:
Q  86 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 185  Q
    ||||| |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||  ||| | |||||||||    
T  18431611 acaatacgttttgttttgtttgtgttgtgtgtgtttttcaatttccactttccttcccgtaccttatgtttatgcatataaaa--aattaaaattaggct 18431708  T
Q  186 agaatttgttgtggcagctgccacaccatgtttcactctacatccgc 232  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||    
T  18431709 agaatctggtgtggcagctgccacaccatgtttcactctacatccgc 18431755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 96 - 238
Target Start/End: Original strand, 22788364 - 22788508
Alignment:
Q  96 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataa--taataattaggctagaatttg 193  Q
    |||||||| |||| | |||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||   || |||||||| ||||| ||    
T  22788364 ttgttttgtttgtatggtgtgtgttttccaatttccactttccttcccttgccatatgtttatacatataaaaaaaaataaaaaattaggcaagaatctg 22788463  T
Q  194 ttgtggcagctgccacaccatgtttcactctacatccgctcctga 238  Q
     |||||||| |||||||||||||||||| || ||||||| |||||    
T  22788464 gtgtggcagttgccacaccatgtttcacactccatccgcccctga 22788508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 6154604 - 6154683
Alignment:
Q  139 ttcccgtgccttatgtt--tatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttca 220  Q
    |||||||||||||||||  |||||||||||||  ||    |||||||||||||| || ||| ||||||| ||||||||||||||    
T  6154604 ttcccgtgccttatgttattatgcatataaaacaaa----aattaggctagaatctggtgttgcagctgtcacaccatgtttca 6154683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 16916344 - 16916491
Alignment:
Q  86 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 185  Q
    |||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    || |||||||||    
T  16916344 acaatgtgttttgttttgtttgtattgtgtatattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaa----aaaaattaggct 16916439  T
Q  186 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctg 237  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||| ||||    
T  16916440 agaatctggtgtggcagctgacacaccatgtttcactctacatccgcccctg 16916491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 5014070 - 5014213
Alignment:
Q  93 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataat----aattaggctaga 188  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||     ||||||| ||||    
T  5014070 gttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttcccatgccttatgtttatgcatataaaaaaaaaaaacaaaaattaggttaga 5014169  T
Q  189 atttgttgtggcagctgccacaccatgtttcactctacatccgc 232  Q
    || || ||||||||||||||||||||||||||||||||||||||    
T  5014170 atctggtgtggcagctgccacaccatgtttcactctacatccgc 5014213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 16693108 - 16692978
Alignment:
Q  96 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaa-----aataataataattaggctagaat 190  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||     || || || |||||||| |||||    
T  16693108 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgccttatgtttatgcatataaacaaaaaaaaaaaaaaattaggcaagaat 16693009  T
Q  191 ttgttgtggcagctgccacaccatgtttcac 221  Q
     || |||||||||| ||||||||||||||||    
T  16693008 ctggtgtggcagctaccacaccatgtttcac 16692978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 86 - 231
Target Start/End: Complemental strand, 46437453 - 46437312
Alignment:
Q  86 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataataataattaggct 185  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    || ||||||| |    
T  46437453 acaacgcgttttgttttgtttgtgttgtgtgtgttttccaatttccactttccttctcgtgccttatgtttatgcatataaaaa----aaaaattaggtt 46437358  T
Q  186 agaatttgttgtggcagctgccacaccatgtttcactctacatccg 231  Q
    | ||| |  |||||||||||||||||||||||||||||||||||||    
T  46437357 ataatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 38663084 - 38663019
Alignment:
Q  155 ttatgcatataaaaataataataattaggctagaatttgttgtggcagctgccacaccatgtttcac 221  Q
    ||||||||||||||| || || ||| ||  |||||| || |||||||||||||||||||||||||||    
T  38663084 ttatgcatataaaaaaaaaaaaaat-agattagaatctggtgtggcagctgccacaccatgtttcac 38663019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 424736 - 424876
Alignment:
Q  86 acaatgcgttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtt--tatgcatataaaaataataataattagg 183  Q
    |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||    | |||||||||||  |||||||||||||  ||    |||||||    
T  424736 acaacgcgttttgttttgtttgtgttgtgtgtcttttccaatttccactttcc----cctgccttatgttattatgcatataaaacaaa----aattagg 424827  T
Q  184 ctagaatttgttgtggcagctgccacaccatgtttcactctacatccgc 232  Q
    ||||||| || |||||||||||||||||||||||||| | |||||||||    
T  424828 ctagaatctggtgtggcagctgccacaccatgtttcaatgtacatccgc 424876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 232
Target Start/End: Original strand, 18113738 - 18113878
Alignment:
Q  93 gttttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgt--ttatgcatat--aaaaataataat-aattaggctag 187  Q
    ||||||||||| ||||||||||||| |||| |||||||||||    ||||| || |||||||  |||   ||||  ||||| |||||| ||| |||||||    
T  18113738 gttttgttttgtttgtgttgtgtgtgtttttcaatttccact----ttcccatgtcttatgttattaaaaatataaaaaaaaaataataaataaggctag 18113833  T
Q  188 aatttgttgtggcagctgccacaccatgtttcactctacatccgc 232  Q
    ||| || ||||||| |||||||||||||||||| | |||||||||    
T  18113834 aatctggtgtggcaactgccacaccatgtttcaatgtacatccgc 18113878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 25634440 - 25634475
Alignment:
Q  186 agaatttgttgtggcagctgccacaccatgtttcac 221  Q
    |||||||| |||||||||||||||||||||||||||    
T  25634440 agaatttggtgtggcagctgccacaccatgtttcac 25634475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 17074694 - 17074657
Alignment:
Q  94 ttttgttttgattgtgttgtgtgtattttccaatttcc 131  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  17074694 ttttgttttggttgtgttgtgtgtattttccactttcc 17074657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 26555615 - 26555473
Alignment:
Q  96 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgccttatgtttatgcatataaaaataat---aataattaggctagaattt 192  Q
    |||||||| |||||| |||| | |||||||||||||||||||||||||     ||||||||||||||||||||| ||    || || ||||| ||||| |    
T  26555615 ttgttttgtttgtgtggtgtttgttttccaatttccactttccttccc-----ttatgtttatgcatataaaaaaaaataaaaaaaataggcaagaatct 26555521  T
Q  193 gttgtggcagctgccacaccatgtttcactctacatccgctcctgatt 240  Q
    | ||||||||||||||||||||||||||| || ||||||| |||||||    
T  26555520 ggtgtggcagctgccacaccatgtttcacactccatccgcccctgatt 26555473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 151
Target Start/End: Complemental strand, 52118434 - 52118379
Alignment:
Q  96 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctta 151  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||    
T  52118434 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctta 52118379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 2125316 - 2125280
Alignment:
Q  185 tagaatttgttgtggcagctgccacaccatgtttcac 221  Q
    |||||| || |||||||||||||||||||||||||||    
T  2125316 tagaatctggtgtggcagctgccacaccatgtttcac 2125280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 28535302 - 28535248
Alignment:
Q  96 ttgttttgattgtgttgtgtgtattttccaatttccactttccttcccgtgcctt 150  Q
    |||||||| |||||| |||||| ||||||||||||||||||||||||| ||||||    
T  28535302 ttgttttgtttgtgtggtgtgtgttttccaatttccactttccttcccttgcctt 28535248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 28535244 - 28535191
Alignment:
Q  186 agaatttgttgtggcagctgccacaccatgtttcactctacatccgctcctgat 239  Q
    ||||| || ||||||||||||||||||||||||||| || ||||||| ||||||    
T  28535244 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgat 28535191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University