View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13455_low_8 (Length: 337)

Name: NF13455_low_8
Description: NF13455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13455_low_8
NF13455_low_8
[»] chr2 (1 HSPs)
chr2 (20-323)||(2410780-2411071)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 2411071 - 2410780
Alignment:
Q  20 aaaagaacccttgaataccgtttcttttattctcttactaccagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatct 119  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2411071 aaaagaacccttgaataccgtttcttttattctcttac---cagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatct 2410975  T
Q  120 aaacttgttgttacaaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctat 219  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||        |||||||||||||||||||||||||||||||||||    
T  2410974 aaacttgttgttacaa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaataatgtcagaaaatcgattcttgcctat 2410884  T
Q  220 aattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgat 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410883 aattgaagaagaggaaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgat 2410784  T

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