View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13456_high_2 (Length: 291)

Name: NF13456_high_2
Description: NF13456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13456_high_2
NF13456_high_2
[»] chr7 (12 HSPs)
chr7 (16-273)||(36220824-36221089)
chr7 (15-241)||(36216868-36217097)
chr7 (21-248)||(36226491-36226721)
chr7 (15-248)||(35978038-35978274)
chr7 (15-248)||(35999450-35999686)
chr7 (15-247)||(35973904-35974139)
chr7 (15-247)||(35995316-35995551)
chr7 (15-248)||(35958583-35958819)
chr7 (92-249)||(35982683-35982843)
chr7 (92-249)||(36004095-36004255)
chr7 (210-250)||(36210862-36210902)
chr7 (165-248)||(35930982-35931068)
[»] chr2 (2 HSPs)
chr2 (115-156)||(26328076-26328117)
chr2 (193-249)||(26328010-26328066)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 273
Target Start/End: Complemental strand, 36221089 - 36220824
Alignment:
Q  16 catcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctct 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36221089 catcttcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctct 36220990  T
Q  116 gacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcataagcaagctttccaagcagtgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36220989 gacaattgacaaagtgtctttgatcccttggagatcatcatacacacggtaggcacgagaagcttgctcaaaagcataagcaagctttccaagcagtgaa 36220890  T
Q  216 tcagcaatatcaaaca----caaatgattcagccatgtc----ttaatcaggaaatagtagaaatt 273  Q
    ||||||||||||||||    |||||||||||||||||||    |||||||||||||||||||||||    
T  36220889 tcagcaatatcaaacacaaacaaatgattcagccatgtcaatgttaatcaggaaatagtagaaatt 36220824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 36217097 - 36216868
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| ||||||||||||||||||||||| | |||||| |||||||||| ||  ||||||||  |||||||||||||||| ||||| |  ||||||||||    
T  36217097 acatcttcagcatcatagcagatgttttgaatctgccttaaccattcacacaaggcatgttgccggttcttcttctcctcagcatctagcagtagacctc 36216998  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcat---aagcaagctttccaagcag 211  Q
    |||||||||| | ||| |||||||||| ||||||||| ||||| |||| |||||||||||| ||||  ||| ||||||   ||||||| || || | |||    
T  36216997 tgacaattgatagagtatctttgatccgttggagatcttcatatacaccgtaggcacgagaggcttcttcataagcataagaagcaagtttccctaacag 36216898  T
Q  212 tgaatcagcaatatcaaacacaaatgattc 241  Q
    ||||| ||||| ||||||||||||||||||    
T  36216897 tgaattagcaacatcaaacacaaatgattc 36216868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 36226491 - 36226721
Alignment:
Q  21 tcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctctgacaa 120  Q
    ||||||||| |||| |||| ||| | |||||||| |||||||| | |  ||||    |||| |||||| | ||| ||||||||||| |||||||| ||||    
T  36226491 tcagcatcagagcaaatgtattgaatctgcctcagccattcacactgcccatgcctctggtccttcttgtgctcagcatccaatagaagacctctaacaa 36226590  T
Q  121 ttgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcataag---caagctttccaagcagtgaatc 217  Q
    ||| ||||||||||||||||| ||||||||| ||||||||||  ||||| ||||||||||  ||| || ||||||    ||||||||||||||| |||||    
T  36226591 ttgccaaagtgtctttgatccgttggagatcttcatacacaccataggctcgagaagcttcttcacaaacataagaactaagctttccaagcagcgaatc 36226690  T
Q  218 agcaatatcaaacacaaatgattcagccatg 248  Q
    |||||||||||||||||||||||| ||||||    
T  36226691 agcaatatcaaacacaaatgattcggccatg 36226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 35978038 - 35978274
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| |||||||||||||| || ||||| | |||||||| |||||||||||   |||| | ||| | ||||||   ||| |||||||| | || ||| |    
T  35978038 acatcttcagcatcatagcatatattttgaatctgcctcagccattcacgcaccccatgcttttgatccttcttgcactcagcatccaacaatacaccac 35978137  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcataag---caagctttccaagcag 211  Q
    |||||||||| | ||||||||||| |||||||||||| | ||||||||  |||||  |||||||||  ||| |||||||||   |||| ||||| | |||    
T  35978138 tgacaattgagagagtgtctttgaacccttggagatctttatacacaccataggctagagaagcttcttcataagcataagatgcaagttttcctaacag 35978237  T
Q  212 tgaatcagcaatatcaaacacaaatgattcagccatg 248  Q
    ||||| |||||||||||||||||||||||||||||||    
T  35978238 tgaatgagcaatatcaaacacaaatgattcagccatg 35978274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 35999450 - 35999686
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| |||||||||||||| || ||||| | |||||||| |||||||||||   |||| | ||| | ||||||   ||| |||||||| | || ||| |    
T  35999450 acatcttcagcatcatagcatatattttgaatctgcctcagccattcacgcaccccatgcttttgatccttcttgcactcagcatccaacaatacaccac 35999549  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcataag---caagctttccaagcag 211  Q
    |||||||||| | ||||||||||| |||||||||||| | ||||||||  |||||  |||||||||  ||| |||||||||   |||| ||||| | |||    
T  35999550 tgacaattgagagagtgtctttgaacccttggagatctttatacacaccataggctagagaagcttcttcataagcataagatgcaagttttcctaacag 35999649  T
Q  212 tgaatcagcaatatcaaacacaaatgattcagccatg 248  Q
    ||||| |||||||||||||||||||||||||||||||    
T  35999650 tgaatgagcaatatcaaacacaaatgattcagccatg 35999686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 35973904 - 35974139
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| ||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| |||||| | ||| |||||||| || ||||||     
T  35973904 acatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttcttatactcagcatccaacagaagaccta 35974003  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcat---aagcaagctttccaagcag 211  Q
    |||||||||| ||||||| ||||||  |||| ||||||||||||||||  || |  |||||||| |  ||| | ||||   |||||||||| || |||||    
T  35974004 tgacaattgaaaaagtgtttttgatatcttgtagatcatcatacacaccataagttcgagaagcctcgtcataggcataagaagcaagcttccctagcag 35974103  T
Q  212 tgaatcagcaatatcaaacacaaatgattcagccat 247  Q
     |||||||||||||| || |||||||||| ||||||    
T  35974104 agaatcagcaatatctaagacaaatgatttagccat 35974139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 35995316 - 35995551
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| ||||||||  ||||||||||||| | |||||||| ||||||||||||  |||| | ||||| |||||| | ||| |||||||| || ||||||     
T  35995316 acatcttcagcatcggagcagatgttttgaatctgcctcagccattcacgcagcccatgcttttggtccttcttatactcagcatccaacagaagaccta 35995415  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcat---aagcaagctttccaagcag 211  Q
    |||||||||| ||||||| ||||||  |||| ||||||||||||||||  || |  |||||||| |  ||| | ||||   |||||||||| || |||||    
T  35995416 tgacaattgaaaaagtgtttttgatatcttgtagatcatcatacacaccataagttcgagaagcctcgtcataggcataagaagcaagcttccctagcag 35995515  T
Q  212 tgaatcagcaatatcaaacacaaatgattcagccat 247  Q
     |||||||||||||| || |||||||||| ||||||    
T  35995516 agaatcagcaatatctaagacaaatgatttagccat 35995551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 35958583 - 35958819
Alignment:
Q  15 acatcatcagcatcatagcagatgttttgtacctgcctcaaccattcacgcagagcatgttgttggttcttcttctcctcggcatccaatagtagacctc 114  Q
    ||||| |||||||||||||| || ||||| | |||||||| |||||||||||   |||| | ||||| ||||||   ||| |||||||| | || ||| |    
T  35958583 acatcttcagcatcatagcatatattttgaatctgcctcagccattcacgcaagccatgcttttggtccttcttgcactcagcatccaacaatacaccac 35958682  T
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagcataa---gcaagctttccaagcag 211  Q
    |||||||||| | ||||||||||| | |||| ||||| | ||||||||  ||||||||||||||||  ||| ||||||||   ||||| ||||| | |||    
T  35958683 tgacaattgagagagtgtctttgaactcttgtagatctttatacacaccataggcacgagaagcttcttcataagcataagatgcaagttttcctaacag 35958782  T
Q  212 tgaatcagcaatatcaaacacaaatgattcagccatg 248  Q
    ||||  ||||||||||||  |||||||||| ||||||    
T  35958783 tgaacgagcaatatcaaaggcaaatgattctgccatg 35958819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 35982683 - 35982843
Alignment:
Q  92 ctcggcatccaatagtagacctctgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagca 191  Q
    ||||| ||||||||| |||||||| ||||||| |||||| |||||||||| ||||| ||| ||||||||||  ||||| | |||| | |  ||| |||||    
T  35982683 ctcggaatccaatagaagacctctaacaattgccaaagtatctttgatccgttggaaatcttcatacacaccataggctccagaaacctcttcataagca 35982782  T
Q  192 ta---agcaagctttccaagcagtgaatcagcaatatcaaacacaaatgattcagccatgt 249  Q
    ||   || ||||||||||||||||||||| ||||  || || ||||||||||| |||||||    
T  35982783 taggaagtaagctttccaagcagtgaatcggcaacgtcgaagacaaatgattctgccatgt 35982843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 249
Target Start/End: Original strand, 36004095 - 36004255
Alignment:
Q  92 ctcggcatccaatagtagacctctgacaattgacaaagtgtctttgatcccttggagatcatcatacacacagtaggcacgagaagcttgctcaaaagca 191  Q
    ||||| ||||||||| |||||||| ||||||| |||||| |||||||||| ||||| ||| ||||||||||  ||||| | |||| | |  ||| |||||    
T  36004095 ctcggaatccaatagaagacctctaacaattgccaaagtatctttgatccgttggaaatcttcatacacaccataggctccagaaacctcttcataagca 36004194  T
Q  192 ta---agcaagctttccaagcagtgaatcagcaatatcaaacacaaatgattcagccatgt 249  Q
    ||   || ||||||||||||||||||||| ||||  || || ||||||||||| |||||||    
T  36004195 taggaagtaagctttccaagcagtgaatcggcaacgtcgaagacaaatgattctgccatgt 36004255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 36210902 - 36210862
Alignment:
Q  210 agtgaatcagcaatatcaaacacaaatgattcagccatgtc 250  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  36210902 agtgaatcagcaatattaaacacaaatgattcagccatgtc 36210862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 248
Target Start/End: Original strand, 35930982 - 35931068
Alignment:
Q  165 taggcacgagaagcttgctcaaaagcataag---caagctttccaagcagtgaatcagcaatatcaaacacaaatgattcagccatg 248  Q
    ||||||||||||||||  ||| |||||||||   |||| ||||| |  ||||||| | ||||||||||  |||||||||||||||||    
T  35930982 taggcacgagaagcttcttcataagcataagatgcaagttttcctaatagtgaatgaacaatatcaaaggcaaatgattcagccatg 35931068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 26328117 - 26328076
Alignment:
Q  115 tgacaattgacaaagtgtctttgatcccttggagatcatcat 156  Q
    ||||||||||||||||||||||||||||||| ||||| ||||    
T  26328117 tgacaattgacaaagtgtctttgatcccttgtagatcttcat 26328076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Complemental strand, 26328066 - 26328010
Alignment:
Q  193 aagcaagctttccaagcagtgaatcagcaatatcaaacacaaatgattcagccatgt 249  Q
    ||||||||||| |||| |||||||||||||||||||| | |||||| || |||||||    
T  26328066 aagcaagcttttcaaggagtgaatcagcaatatcaaagagaaatgaatctgccatgt 26328010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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