View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13456_low_1 (Length: 345)

Name: NF13456_low_1
Description: NF13456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13456_low_1
NF13456_low_1
[»] chr3 (13 HSPs)
chr3 (170-328)||(26751340-26751498)
chr3 (13-141)||(26751527-26751655)
chr3 (225-328)||(26699010-26699113)
chr3 (225-328)||(26734173-26734276)
chr3 (220-328)||(26714162-26714270)
chr3 (220-328)||(26737398-26737506)
chr3 (238-319)||(26675807-26675888)
chr3 (237-323)||(26694353-26694439)
chr3 (231-309)||(47212592-47212670)
chr3 (267-323)||(26731533-26731589)
chr3 (218-328)||(26744415-26744525)
chr3 (237-323)||(26690192-26690278)
chr3 (81-117)||(26734393-26734429)


Alignment Details
Target: chr3 (Bit Score: 151; Significance: 7e-80; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 170 - 328
Target Start/End: Complemental strand, 26751498 - 26751340
Alignment:
Q  170 cttgtttaggagcagcagaaattctgatgagaatcatgaatatgttctagcagcaacagggtttaggaaattcagttactctgaattgaaacaagctaca 269  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26751498 cttgtttaggagcagcagaaattctgatgagaatcatgagtatgttctagcagcaacagggtttaggaaattcagttactctgaattgaaacaagctaca 26751399  T
Q  270 aaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggtgtttt 328  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26751398 aaaggttttagtcaagagatcggaagaggtgctggaggaactgtgtataagggtgtttt 26751340  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 26751655 - 26751527
Alignment:
Q  13 aaaatagcagtggaatggtttgtgagaggaatggagtggtaaagcttgacagagaatacatgaaaaagaaagaaaatggttcattgaagttcatgctttg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26751655 aaaatagcagtggaatggtttgtgagaggaatggagtggtaaagcttgacagagaatacatgaagaagaaagaaaatggttcattgaagttcatgctttg 26751556  T
Q  113 gtttgcttgtggattaggaggattagagc 141  Q
    |||||||||||||||||||||||||||||    
T  26751555 gtttgcttgtggattaggaggattagagc 26751527  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 26699113 - 26699010
Alignment:
Q  225 acagggtttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggtg 324  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||||||  ||||||||||||| || || ||||||||||| ||||| ||||    
T  26699113 acagggtttaggaaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtg 26699014  T
Q  325 tttt 328  Q
    ||||    
T  26699013 tttt 26699010  T

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Target: chr3; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 225 - 328
Target Start/End: Complemental strand, 26734276 - 26734173
Alignment:
Q  225 acagggtttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggtg 324  Q
    |||||||||||||||||||||||||||||| | || ||||||||||||||||||||  ||||||||||||| || || ||||||||||| ||||| ||||    
T  26734276 acagggtttaggaaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtg 26734177  T
Q  325 tttt 328  Q
    ||||    
T  26734176 tttt 26734173  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 26714270 - 26714162
Alignment:
Q  220 cagcaacagggtttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataa 319  Q
    ||||||| |||||||| |||||||| || |||||||| ||| ||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||    
T  26714270 cagcaaccgggtttagaaaattcagctattctgaattaaaagaagctacaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataa 26714171  T
Q  320 gggtgtttt 328  Q
     ||| ||||    
T  26714170 aggtatttt 26714162  T

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Target: chr3; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 220 - 328
Target Start/End: Complemental strand, 26737506 - 26737398
Alignment:
Q  220 cagcaacagggtttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataa 319  Q
    ||||||| |||||||| |||||||| || |||||||| ||| ||||||||||||||||||| |||||||| |||||||| || |||||||| ||||||||    
T  26737506 cagcaaccgggtttagaaaattcagctattctgaattaaaaaaagctacaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataa 26737407  T
Q  320 gggtgtttt 328  Q
     ||| ||||    
T  26737406 aggtatttt 26737398  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 319
Target Start/End: Complemental strand, 26675888 - 26675807
Alignment:
Q  238 aattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataa 319  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||  ||||| ||||||||||| |||||    
T  26675888 aattcagttactctgaattgaaacaagcaacaaaaggtttcagtcaagagattggaaagggtgctggaggaactgtatataa 26675807  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 26694353 - 26694439
Alignment:
Q  237 aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggt 323  Q
    ||||||| |||||| ||| | |||||||| |||||| |||||||||||||||| ||||  ||||| |||||||||||||||||||||    
T  26694353 aaattcacttactcggaactaaaacaagcaacaaaatgttttagtcaagagattggaaagggtgctggaggaactgtgtataagggt 26694439  T

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Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 309
Target Start/End: Complemental strand, 47212670 - 47212592
Alignment:
Q  231 tttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaa 309  Q
    ||||| ||||||||||| |||||||||||| ||||||| ||| |||||||||||||||| |||| ||| || |||||||    
T  47212670 tttagaaaattcagttattctgaattgaaaaaagctaccaaaagttttagtcaagagattggaaaaggcgcaggaggaa 47212592  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 26731533 - 26731589
Alignment:
Q  267 acaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggt 323  Q
    |||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  26731533 acaaaatgttttagtcaagagattggaagtggtgctggaggaactgtgtataagggt 26731589  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 328
Target Start/End: Complemental strand, 26744525 - 26744415
Alignment:
Q  218 agcagcaacagggtttaggaaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtat 317  Q
    |||||||||||| |||| ||||||||  ||||||||| | ||||| || |||||   ||| ||||||||||| ||||  |||||  | ||||||||||||    
T  26744525 agcagcaacaggatttacgaaattcacctactctgaactaaaacatgcaacaaagaatttcagtcaagagattggaaagggtgcttgtggaactgtgtat 26744426  T
Q  318 aagggtgtttt 328  Q
    |||||||||||    
T  26744425 aagggtgtttt 26744415  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 26690192 - 26690278
Alignment:
Q  237 aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgccggaggaactgtgtataagggt 323  Q
    ||||||| |||||| ||| | ||||  || |||||| |||||||||||||||| ||||  ||||| |||||||||||||||| ||||    
T  26690192 aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggt 26690278  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 117
Target Start/End: Complemental strand, 26734429 - 26734393
Alignment:
Q  81 aaagaaaatggttcattgaagttcatgctttggtttg 117  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  26734429 aaagaaaatggatcagtgaagttcatgctttggtttg 26734393  T

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