View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13457_high_2 (Length: 330)
Name: NF13457_high_2
Description: NF13457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13457_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 5758265 - 5758576
Alignment:
| Q |
1 |
caaaggccaaaagataattcttctacaatataatcaacctaaggcatcatatgaaatactcacatgttagtaaaacatgacaaagattgtagaacaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5758265 |
caaaggccaaaagataattcttctacaatataatcaacctaaggcatcatatgaaatactcacatgttagtaaaacatgacaaagattgtagaacaacat |
5758364 |
T |
|
| Q |
101 |
atatcaatgccatacattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaacgtgagagaacggacatgcttt |
200 |
Q |
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| T |
5758365 |
atatcaatgccatacattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaacgtgagagaacggacatgcttt |
5758464 |
T |
|
| Q |
201 |
accggaatattttctcactaatctactttcttcccgagtatacctcaatgctctaactgtccctactactctattttctctctgattatagataattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5758465 |
accggaatattttctcactaatctactttcttcccgagtatacctcaatgctctaactgtccctactactctattttctctctgattatagataattgtt |
5758564 |
T |
|
| Q |
301 |
ttgcaaccatat |
312 |
Q |
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|||||||||||| |
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| T |
5758565 |
ttgcaaccatat |
5758576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 10482489 - 10482457
Alignment:
| Q |
149 |
actttcaatgagtcgaaaccaaactttcaacgt |
181 |
Q |
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| T |
10482489 |
actttcaatgagtcgaaaccaaactttcaacgt |
10482457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 10468350 - 10468318
Alignment:
| Q |
149 |
actttcaatgagtcgaaaccaaactttcaacgt |
181 |
Q |
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| T |
10468350 |
actttcaatgagtcaaaaccaaactttcaacgt |
10468318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 5979391 - 5979324
Alignment:
| Q |
111 |
catacattcaaacagttgtcaatagtagaagagtacttactttcaatgagtcgaaaccaaactttcaa |
178 |
Q |
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|||| ||||||||| ||| ||| |||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
5979391 |
catagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaa |
5979324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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