View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13457_low_1 (Length: 556)
Name: NF13457_low_1
Description: NF13457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13457_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 4 - 539
Target Start/End: Original strand, 37416459 - 37416994
Alignment:
| Q |
4 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaatgatgcag |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37416459 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcagaggggactgtctcatccactcatatctttctgttaacgatgcag |
37416558 |
T |
|
| Q |
104 |
ctaccgtgtcgtcatagaaactagtannnnnnnccgttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacgagcatttacagat |
203 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
37416559 |
ctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgat |
37416658 |
T |
|
| Q |
204 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
303 |
Q |
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| T |
37416659 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
37416758 |
T |
|
| Q |
304 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacccaccaagatggaatcttt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416759 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacccaccaagatggaatcttt |
37416858 |
T |
|
| Q |
404 |
agcatgataaagaccatttttcttagatgcagacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactca |
503 |
Q |
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| T |
37416859 |
agcatgataaagaccatttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactca |
37416958 |
T |
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| Q |
504 |
cataatgctaatgacacaatccagaggtgttccaaa |
539 |
Q |
| |
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| T |
37416959 |
cataatgctaatgacacaatccacaagtgttccaaa |
37416994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 4 - 539
Target Start/End: Original strand, 37423991 - 37424526
Alignment:
| Q |
4 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaatgatgcag |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37423991 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcataggggactgtctcatccactcatatctttctgttaacgatgcag |
37424090 |
T |
|
| Q |
104 |
ctaccgtgtcgtcatagaaactagtannnnnnnccgttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacgagcatttacagat |
203 |
Q |
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| T |
37424091 |
ctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgat |
37424190 |
T |
|
| Q |
204 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
303 |
Q |
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| T |
37424191 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
37424290 |
T |
|
| Q |
304 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacccaccaagatggaatcttt |
403 |
Q |
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| T |
37424291 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacccaccaagatggaatcttt |
37424390 |
T |
|
| Q |
404 |
agcatgataaagaccatttttcttagatgcagacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactca |
503 |
Q |
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| T |
37424391 |
agcatgataaagaccatttttcttagatgcatacaagacttgcacaaatttcattaccaaattattagagaatgaaattttgttgttcaacaaggactta |
37424490 |
T |
|
| Q |
504 |
cataatgctaatgacacaatccagaggtgttccaaa |
539 |
Q |
| |
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||||||||||||||||||||||| | |||||||||| |
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| T |
37424491 |
cataatgctaatgacacaatccacaagtgttccaaa |
37424526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 518
Target Start/End: Original strand, 8573759 - 8573811
Alignment:
| Q |
466 |
tattagagaatgaaattttgttgttcaacaaggactcacataatgctaatgac |
518 |
Q |
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|||||||||||| |||||||||| ||||||||| |||| ||||||||||||| |
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| T |
8573759 |
tattagagaatgcaattttgttggtcaacaagggctcatgtaatgctaatgac |
8573811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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