View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13457_low_5 (Length: 242)
Name: NF13457_low_5
Description: NF13457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13457_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 47102046 - 47101826
Alignment:
| Q |
18 |
atatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccactttgcaatcatggttcaatcaaagaagttcag |
117 |
Q |
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| T |
47102046 |
atatctaactattctgttccctctgaactttgtccttccatatctctttgcagtgcacaacaacccactttgcaatcatggttcaatcaaagaagttcag |
47101947 |
T |
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| Q |
118 |
aggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttctttccattccaatctaatctagttacata |
217 |
Q |
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| T |
47101946 |
aggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcacccacttttgtaagtttcttttctttccattccaatctaatctagttacata |
47101847 |
T |
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| Q |
218 |
tatttttcattagtcacatca |
238 |
Q |
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| T |
47101846 |
tatttttcattagtcacatca |
47101826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 2429435 - 2429372
Alignment:
| Q |
102 |
aatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
165 |
Q |
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| T |
2429435 |
aatcaaagaaattcagaggtgttaggcaacgccattggggctcttgggtctcggagattcgtca |
2429372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 44649281 - 44649210
Alignment:
| Q |
94 |
catggttcaatcaaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtca |
165 |
Q |
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| T |
44649281 |
catggtacattcaaagaagttcagaggtgtcaggcaacgccattggggctcttgggtctctgagattcgtca |
44649210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 49532337 - 49532400
Alignment:
| Q |
105 |
caaagaagttcagaggtgtcaggcaacgacattggggttcttgggtttcagagattcgtcaccc |
168 |
Q |
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| T |
49532337 |
caaagaagttcagaggagtcaggcagcgccagtggggctcttgggtgtcagaaattcgccaccc |
49532400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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