View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13458_high_3 (Length: 311)
Name: NF13458_high_3
Description: NF13458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13458_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 24097371 - 24097065
Alignment:
| Q |
1 |
caacatatattaaatatacgtgtaaaactcttttatatttgtgtatataaattaaaatttaggaaatacaacaatgttaaatttttatagagagaacttt |
100 |
Q |
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| T |
24097371 |
caacatatattaaatatacgtgtaaaactcttttatatttgtgtatataaattaaaatttaggaaatacaacaatgttaaatttttatagagagaacttt |
24097272 |
T |
|
| Q |
101 |
gttattaactacactcttacatggcttaagtctctagcgttacacataatatttgattnnnnnnntaataattaaacttgtaatttgtgagataggacca |
200 |
Q |
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| T |
24097271 |
gtcattaactacactcttacatggctttagtctctagcgttacacataatatttgattaaaaaaataataattaaaattgtaatttgtgagataggacca |
24097172 |
T |
|
| Q |
201 |
ccaaattaacagtgtagtagtgcttaccattagacactg-----tttctctcctctgggataaaagctttaacgaaacatgataaaaaggaatagagaga |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24097171 |
ccaaattaacagtgtagtagtgcttaccattagaca-tgtttaatttctctcctctgggatagcagctttaacgaaacatgataaaaaggaatagagaga |
24097073 |
T |
|
| Q |
296 |
tgatgatg |
303 |
Q |
| |
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|||||||| |
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|
| T |
24097072 |
tgatgatg |
24097065 |
T |
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